Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 AL139288.1-201ENST00000623748 933 ntBASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM39Q9HCM9 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
TRIM39Q9HCM9 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
TRIM39Q9HCM9 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM39Q9HCM9 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM39Q9HCM9 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM39Q9HCM9 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM39Q9HCM9 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM39Q9HCM9 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM39Q9HCM9 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM39Q9HCM9 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM39Q9HCM9 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.33■□□□□ 0.37
TRIM39Q9HCM9 SIGLEC16-201ENST00000599858 1437 ntBASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 AC003669.1-201ENST00000334569 611 ntBASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 FAM197Y8-203ENST00000450145 560 ntBASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 STK25P1-201ENST00000585406 838 ntBASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 NKAPP1-205ENST00000585790 367 ntBASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 AC073592.4-201ENST00000623827 446 ntBASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM39Q9HCM9 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 SPDYE21P-201ENST00000413323 827 ntBASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 AL020989.1-201ENST00000422979 469 ntBASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 AC064862.7-201ENST00000604520 867 ntBASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 TP73-AS1-207ENST00000624167 988 ntBASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 LINC00304-203ENST00000565008 1864 ntBASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM39Q9HCM9 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM39Q9HCM9 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms