Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USP38Q8NB14 POR-209ENST00000439269 1858 ntTSL 2 BASIC19.5■□□□□ 0.71
USP38Q8NB14 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP38Q8NB14 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC19.49■□□□□ 0.71
USP38Q8NB14 EML3-212ENST00000494176 2901 ntTSL 2 BASIC19.49■□□□□ 0.71
USP38Q8NB14 PMPCAP1-201ENST00000508114 1576 ntBASIC19.49■□□□□ 0.71
USP38Q8NB14 EML3-216ENST00000529309 2909 ntTSL 2 BASIC19.49■□□□□ 0.71
USP38Q8NB14 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP38Q8NB14 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USP38Q8NB14 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC19.49■□□□□ 0.71
USP38Q8NB14 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
USP38Q8NB14 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
USP38Q8NB14 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP38Q8NB14 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC19.49■□□□□ 0.71
USP38Q8NB14 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC19.49■□□□□ 0.71
USP38Q8NB14 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP38Q8NB14 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP38Q8NB14 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC19.49■□□□□ 0.71
USP38Q8NB14 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USP38Q8NB14 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP38Q8NB14 LAGE3P1-201ENST00000425356 484 ntBASIC19.49■□□□□ 0.71
USP38Q8NB14 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
USP38Q8NB14 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC19.49■□□□□ 0.71
USP38Q8NB14 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC19.49■□□□□ 0.71
USP38Q8NB14 CFL1-202ENST00000524553 860 ntTSL 2 BASIC19.49■□□□□ 0.71
USP38Q8NB14 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC19.49■□□□□ 0.71
USP38Q8NB14 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC19.49■□□□□ 0.71
USP38Q8NB14 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC19.49■□□□□ 0.71
USP38Q8NB14 AC105339.3-201ENST00000560043 636 ntBASIC19.49■□□□□ 0.71
USP38Q8NB14 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC19.49■□□□□ 0.71
USP38Q8NB14 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC19.49■□□□□ 0.71
USP38Q8NB14 AC073592.4-201ENST00000623827 446 ntBASIC19.49■□□□□ 0.71
USP38Q8NB14 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC19.49■□□□□ 0.71
USP38Q8NB14 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
USP38Q8NB14 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP38Q8NB14 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP38Q8NB14 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC19.49■□□□□ 0.71
USP38Q8NB14 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
USP38Q8NB14 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP38Q8NB14 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USP38Q8NB14 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USP38Q8NB14 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USP38Q8NB14 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP38Q8NB14 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP38Q8NB14 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
USP38Q8NB14 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC19.48■□□□□ 0.71
USP38Q8NB14 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP38Q8NB14 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC19.48■□□□□ 0.71
USP38Q8NB14 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC19.48■□□□□ 0.71
USP38Q8NB14 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC19.48■□□□□ 0.71
USP38Q8NB14 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC19.48■□□□□ 0.71
USP38Q8NB14 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC19.48■□□□□ 0.71
USP38Q8NB14 PAWRP1-201ENST00000451083 565 ntBASIC19.48■□□□□ 0.71
USP38Q8NB14 PRYP5-201ENST00000451909 266 ntBASIC19.48■□□□□ 0.71
USP38Q8NB14 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP38Q8NB14 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC19.48■□□□□ 0.71
USP38Q8NB14 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP38Q8NB14 MIR1199-201ENST00000621445 119 ntBASIC19.48■□□□□ 0.71
USP38Q8NB14 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC19.48■□□□□ 0.71
USP38Q8NB14 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP38Q8NB14 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC19.48■□□□□ 0.71
USP38Q8NB14 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP38Q8NB14 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP38Q8NB14 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC19.48■□□□□ 0.71
USP38Q8NB14 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
USP38Q8NB14 GNE-204ENST00000539208 2190 ntTSL 2 BASIC19.48■□□□□ 0.71
USP38Q8NB14 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.48■□□□□ 0.71
USP38Q8NB14 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USP38Q8NB14 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC19.48■□□□□ 0.71
USP38Q8NB14 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USP38Q8NB14 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC19.48■□□□□ 0.71
USP38Q8NB14 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
USP38Q8NB14 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
USP38Q8NB14 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC19.48■□□□□ 0.71
USP38Q8NB14 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.47■□□□□ 0.71
USP38Q8NB14 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
USP38Q8NB14 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
USP38Q8NB14 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP38Q8NB14 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
USP38Q8NB14 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP38Q8NB14 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP38Q8NB14 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP38Q8NB14 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP38Q8NB14 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
USP38Q8NB14 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP38Q8NB14 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP38Q8NB14 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP38Q8NB14 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USP38Q8NB14 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC19.47■□□□□ 0.71
USP38Q8NB14 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC19.47■□□□□ 0.71
USP38Q8NB14 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USP38Q8NB14 UNC93B6-202ENST00000528242 690 ntBASIC19.47■□□□□ 0.71
USP38Q8NB14 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC19.47■□□□□ 0.71
USP38Q8NB14 PUDP-206ENST00000540122 825 ntTSL 2 BASIC19.47■□□□□ 0.71
USP38Q8NB14 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC19.47■□□□□ 0.71
USP38Q8NB14 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19.47■□□□□ 0.71
USP38Q8NB14 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC19.47■□□□□ 0.71
USP38Q8NB14 AD001527.2-201ENST00000622994 785 ntBASIC19.47■□□□□ 0.71
USP38Q8NB14 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC19.47■□□□□ 0.71
USP38Q8NB14 AL022326.1-202ENST00000641533 845 ntBASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms