Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
NEK3P51956 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.03■□□□□ 0.48
NEK3P51956 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NEK3P51956 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
NEK3P51956 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
NEK3P51956 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NEK3P51956 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NEK3P51956 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
NEK3P51956 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
NEK3P51956 DANCR-204ENST00000444958 709 ntTSL 3 BASIC18.03■□□□□ 0.48
NEK3P51956 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.03■□□□□ 0.48
NEK3P51956 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.03■□□□□ 0.48
NEK3P51956 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.03■□□□□ 0.48
NEK3P51956 AC009533.2-201ENST00000543664 586 ntBASIC18.03■□□□□ 0.48
NEK3P51956 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
NEK3P51956 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
NEK3P51956 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.03■□□□□ 0.48
NEK3P51956 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
NEK3P51956 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
NEK3P51956 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NEK3P51956 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NEK3P51956 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NEK3P51956 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.03■□□□□ 0.48
NEK3P51956 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.03■□□□□ 0.48
NEK3P51956 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.03■□□□□ 0.48
NEK3P51956 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NEK3P51956 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NEK3P51956 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NEK3P51956 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NEK3P51956 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
NEK3P51956 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
NEK3P51956 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
NEK3P51956 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
NEK3P51956 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
NEK3P51956 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
NEK3P51956 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
NEK3P51956 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
NEK3P51956 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
NEK3P51956 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
NEK3P51956 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
NEK3P51956 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
NEK3P51956 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
NEK3P51956 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
NEK3P51956 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
NEK3P51956 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.48
NEK3P51956 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
NEK3P51956 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
NEK3P51956 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
NEK3P51956 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
NEK3P51956 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
NEK3P51956 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.02■□□□□ 0.48
NEK3P51956 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.02■□□□□ 0.48
NEK3P51956 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
NEK3P51956 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.02■□□□□ 0.48
NEK3P51956 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
NEK3P51956 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.02■□□□□ 0.48
NEK3P51956 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.02■□□□□ 0.48
NEK3P51956 AL591684.3-201ENST00000605187 298 ntBASIC18.02■□□□□ 0.48
NEK3P51956 AL138831.2-201ENST00000606564 490 ntBASIC18.02■□□□□ 0.48
NEK3P51956 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
NEK3P51956 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.02■□□□□ 0.48
NEK3P51956 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.02■□□□□ 0.48
NEK3P51956 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.47
NEK3P51956 NKILA-202ENST00000614771 2598 ntBASIC18.02■□□□□ 0.47
NEK3P51956 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
NEK3P51956 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.47
NEK3P51956 AC133963.1-201ENST00000504166 1679 ntBASIC18.02■□□□□ 0.47
NEK3P51956 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
NEK3P51956 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
NEK3P51956 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
NEK3P51956 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
NEK3P51956 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
NEK3P51956 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
NEK3P51956 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
NEK3P51956 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
NEK3P51956 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
NEK3P51956 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
NEK3P51956 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
NEK3P51956 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
NEK3P51956 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
NEK3P51956 TP73-AS1-210ENST00000637775 1455 ntBASIC18.01■□□□□ 0.47
NEK3P51956 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
NEK3P51956 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
NEK3P51956 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
NEK3P51956 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
NEK3P51956 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.01■□□□□ 0.47
NEK3P51956 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
NEK3P51956 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
NEK3P51956 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
NEK3P51956 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.01■□□□□ 0.47
NEK3P51956 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.01■□□□□ 0.47
NEK3P51956 AC125634.1-201ENST00000438758 1403 ntBASIC18.01■□□□□ 0.47
NEK3P51956 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
NEK3P51956 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
NEK3P51956 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
NEK3P51956 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
NEK3P51956 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
NEK3P51956 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC18.01■□□□□ 0.47
NEK3P51956 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.01■□□□□ 0.47
NEK3P51956 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms