Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.6■□□□□ 0.25
COL5A1P20908 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.6■□□□□ 0.25
COL5A1P20908 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL5A1P20908 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
COL5A1P20908 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
COL5A1P20908 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.6■□□□□ 0.25
COL5A1P20908 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL5A1P20908 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL5A1P20908 COPE-202ENST00000349893 948 ntTSL 2 BASIC16.6■□□□□ 0.25
COL5A1P20908 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL5A1P20908 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC16.6■□□□□ 0.25
COL5A1P20908 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
COL5A1P20908 TSFM-210ENST00000550559 897 ntTSL 5 BASIC16.6■□□□□ 0.25
COL5A1P20908 RARRES2P8-201ENST00000566335 367 ntBASIC16.6■□□□□ 0.25
COL5A1P20908 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.6■□□□□ 0.25
COL5A1P20908 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.6■□□□□ 0.25
COL5A1P20908 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL5A1P20908 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.6■□□□□ 0.25
COL5A1P20908 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
COL5A1P20908 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC16.6■□□□□ 0.25
COL5A1P20908 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
COL5A1P20908 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.6■□□□□ 0.25
COL5A1P20908 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL5A1P20908 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
COL5A1P20908 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL5A1P20908 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.59■□□□□ 0.25
COL5A1P20908 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC16.59■□□□□ 0.25
COL5A1P20908 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
COL5A1P20908 TFAMP1-201ENST00000412727 736 ntBASIC16.59■□□□□ 0.25
COL5A1P20908 AC092474.2-201ENST00000424288 719 ntBASIC16.59■□□□□ 0.25
COL5A1P20908 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.59■□□□□ 0.25
COL5A1P20908 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
COL5A1P20908 AC190387.1-201ENST00000551683 408 ntBASIC16.59■□□□□ 0.25
COL5A1P20908 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL5A1P20908 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL5A1P20908 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.59■□□□□ 0.25
COL5A1P20908 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.59■□□□□ 0.25
COL5A1P20908 AL390961.4-201ENST00000623958 2535 ntBASIC16.59■□□□□ 0.25
COL5A1P20908 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL5A1P20908 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC16.59■□□□□ 0.25
COL5A1P20908 AC046185.3-201ENST00000623228 1824 ntBASIC16.59■□□□□ 0.25
COL5A1P20908 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.59■□□□□ 0.25
COL5A1P20908 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL5A1P20908 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL5A1P20908 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL5A1P20908 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC16.59■□□□□ 0.25
COL5A1P20908 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.59■□□□□ 0.25
COL5A1P20908 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
COL5A1P20908 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
COL5A1P20908 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL5A1P20908 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL5A1P20908 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.59■□□□□ 0.25
COL5A1P20908 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.59■□□□□ 0.25
COL5A1P20908 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.59■□□□□ 0.25
COL5A1P20908 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
COL5A1P20908 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.59■□□□□ 0.25
COL5A1P20908 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.59■□□□□ 0.25
COL5A1P20908 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
COL5A1P20908 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.59■□□□□ 0.25
COL5A1P20908 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
COL5A1P20908 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
COL5A1P20908 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
COL5A1P20908 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
COL5A1P20908 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.58■□□□□ 0.25
COL5A1P20908 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL5A1P20908 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.58■□□□□ 0.25
COL5A1P20908 AP000997.3-201ENST00000623333 2250 ntBASIC16.58■□□□□ 0.25
COL5A1P20908 REXO1L11P-201ENST00000620964 1927 ntBASIC16.58■□□□□ 0.24
COL5A1P20908 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL5A1P20908 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL5A1P20908 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.58■□□□□ 0.24
COL5A1P20908 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC16.58■□□□□ 0.24
COL5A1P20908 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC16.58■□□□□ 0.24
COL5A1P20908 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL5A1P20908 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.58■□□□□ 0.24
COL5A1P20908 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL5A1P20908 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL5A1P20908 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL5A1P20908 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.58■□□□□ 0.24
COL5A1P20908 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.58■□□□□ 0.24
COL5A1P20908 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC16.58■□□□□ 0.24
COL5A1P20908 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL5A1P20908 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.58■□□□□ 0.24
COL5A1P20908 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.58■□□□□ 0.24
COL5A1P20908 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL5A1P20908 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.58■□□□□ 0.24
COL5A1P20908 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.58■□□□□ 0.24
COL5A1P20908 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.58■□□□□ 0.24
COL5A1P20908 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.58■□□□□ 0.24
COL5A1P20908 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL5A1P20908 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.58■□□□□ 0.24
COL5A1P20908 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.58■□□□□ 0.24
COL5A1P20908 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL5A1P20908 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL5A1P20908 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL5A1P20908 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL5A1P20908 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL5A1P20908 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL5A1P20908 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.57■□□□□ 0.24
COL5A1P20908 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms