Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM13O60858 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM13O60858 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM13O60858 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM13O60858 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM13O60858 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM13O60858 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.22■□□□□ 0.35
TRIM13O60858 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM13O60858 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM13O60858 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.22■□□□□ 0.35
TRIM13O60858 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
TRIM13O60858 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.22■□□□□ 0.35
TRIM13O60858 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.22■□□□□ 0.35
TRIM13O60858 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM13O60858 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.22■□□□□ 0.35
TRIM13O60858 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM13O60858 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM13O60858 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM13O60858 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.22■□□□□ 0.35
TRIM13O60858 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM13O60858 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM13O60858 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.22■□□□□ 0.35
TRIM13O60858 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.22■□□□□ 0.35
TRIM13O60858 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM13O60858 AC068472.1-201ENST00000474589 881 ntBASIC17.22■□□□□ 0.35
TRIM13O60858 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM13O60858 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.22■□□□□ 0.35
TRIM13O60858 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM13O60858 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM13O60858 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
TRIM13O60858 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM13O60858 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRIM13O60858 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM13O60858 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM13O60858 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM13O60858 AC093525.9-201ENST00000624961 1746 ntBASIC17.21■□□□□ 0.35
TRIM13O60858 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM13O60858 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.21■□□□□ 0.35
TRIM13O60858 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM13O60858 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
TRIM13O60858 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM13O60858 AC018695.7-201ENST00000624587 2492 ntBASIC17.21■□□□□ 0.35
TRIM13O60858 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
TRIM13O60858 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
TRIM13O60858 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM13O60858 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM13O60858 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM13O60858 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM13O60858 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM13O60858 IGHGP-201ENST00000390555 1178 ntBASIC17.21■□□□□ 0.35
TRIM13O60858 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.21■□□□□ 0.35
TRIM13O60858 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM13O60858 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
TRIM13O60858 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.21■□□□□ 0.35
TRIM13O60858 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM13O60858 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.21■□□□□ 0.35
TRIM13O60858 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM13O60858 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
TRIM13O60858 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.21■□□□□ 0.35
TRIM13O60858 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM13O60858 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.21■□□□□ 0.35
TRIM13O60858 TMEM191A-211ENST00000637163 1067 ntBASIC17.21■□□□□ 0.35
TRIM13O60858 AL031432.5-201ENST00000641059 760 ntBASIC17.21■□□□□ 0.35
TRIM13O60858 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM13O60858 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
TRIM13O60858 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM13O60858 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM13O60858 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.21■□□□□ 0.35
TRIM13O60858 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
TRIM13O60858 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.21■□□□□ 0.35
TRIM13O60858 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM13O60858 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRIM13O60858 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.21■□□□□ 0.34
TRIM13O60858 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
TRIM13O60858 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM13O60858 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.2■□□□□ 0.34
TRIM13O60858 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
TRIM13O60858 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.2■□□□□ 0.34
TRIM13O60858 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
TRIM13O60858 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.2■□□□□ 0.34
TRIM13O60858 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.2■□□□□ 0.34
TRIM13O60858 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM13O60858 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM13O60858 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM13O60858 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM13O60858 AL353692.3-201ENST00000407031 1396 ntBASIC17.2■□□□□ 0.34
TRIM13O60858 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.2■□□□□ 0.34
TRIM13O60858 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
TRIM13O60858 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC17.2■□□□□ 0.34
TRIM13O60858 SLC25A1P3-201ENST00000395415 828 ntBASIC17.2■□□□□ 0.34
TRIM13O60858 FAM8A6P-201ENST00000407496 1135 ntBASIC17.2■□□□□ 0.34
TRIM13O60858 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
TRIM13O60858 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.2■□□□□ 0.34
TRIM13O60858 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.2■□□□□ 0.34
TRIM13O60858 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.2■□□□□ 0.34
TRIM13O60858 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRIM13O60858 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.2■□□□□ 0.34
TRIM13O60858 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.2■□□□□ 0.34
TRIM13O60858 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.2■□□□□ 0.34
TRIM13O60858 NFIC-211ENST00000641145 8399 ntBASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms