Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PROM1O43490 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
PROM1O43490 HCG4P8-203ENST00000443049 980 ntBASIC16.61■□□□□ 0.25
PROM1O43490 IGHV3-52-201ENST00000519770 353 ntBASIC16.61■□□□□ 0.25
PROM1O43490 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.61■□□□□ 0.25
PROM1O43490 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.61■□□□□ 0.25
PROM1O43490 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.61■□□□□ 0.25
PROM1O43490 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PROM1O43490 AC114341.1-201ENST00000618070 349 ntBASIC16.61■□□□□ 0.25
PROM1O43490 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PROM1O43490 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PROM1O43490 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
PROM1O43490 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PROM1O43490 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PROM1O43490 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.61■□□□□ 0.25
PROM1O43490 LYSMD4-203ENST00000378904 2122 ntBASIC16.61■□□□□ 0.25
PROM1O43490 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PROM1O43490 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
PROM1O43490 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.61■□□□□ 0.25
PROM1O43490 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
PROM1O43490 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.61■□□□□ 0.25
PROM1O43490 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PROM1O43490 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
PROM1O43490 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.61■□□□□ 0.25
PROM1O43490 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PROM1O43490 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PROM1O43490 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PROM1O43490 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PROM1O43490 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PROM1O43490 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PROM1O43490 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PROM1O43490 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PROM1O43490 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PROM1O43490 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PROM1O43490 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PROM1O43490 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.6■□□□□ 0.25
PROM1O43490 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PROM1O43490 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PROM1O43490 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PROM1O43490 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
PROM1O43490 AC106820.2-201ENST00000563775 3264 ntBASIC16.6■□□□□ 0.25
PROM1O43490 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PROM1O43490 MYCLP1-201ENST00000372451 1075 ntBASIC16.6■□□□□ 0.25
PROM1O43490 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
PROM1O43490 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.6■□□□□ 0.25
PROM1O43490 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PROM1O43490 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PROM1O43490 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.6■□□□□ 0.25
PROM1O43490 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC16.6■□□□□ 0.25
PROM1O43490 AL139327.4-201ENST00000612362 153 ntBASIC16.6■□□□□ 0.25
PROM1O43490 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.6■□□□□ 0.25
PROM1O43490 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.6■□□□□ 0.25
PROM1O43490 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PROM1O43490 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.6■□□□□ 0.25
PROM1O43490 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
PROM1O43490 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PROM1O43490 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PROM1O43490 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
PROM1O43490 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.6■□□□□ 0.25
PROM1O43490 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PROM1O43490 KRT8P10-201ENST00000450021 1447 ntBASIC16.6■□□□□ 0.25
PROM1O43490 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.6■□□□□ 0.25
PROM1O43490 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.6■□□□□ 0.25
PROM1O43490 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PROM1O43490 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PROM1O43490 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PROM1O43490 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PROM1O43490 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
PROM1O43490 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PROM1O43490 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PROM1O43490 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.59■□□□□ 0.25
PROM1O43490 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PROM1O43490 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.59■□□□□ 0.25
PROM1O43490 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PROM1O43490 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.59■□□□□ 0.25
PROM1O43490 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PROM1O43490 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PROM1O43490 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
PROM1O43490 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PROM1O43490 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PROM1O43490 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.59■□□□□ 0.25
PROM1O43490 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.59■□□□□ 0.25
PROM1O43490 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.59■□□□□ 0.25
PROM1O43490 MIR3652-201ENST00000579335 131 ntBASIC16.59■□□□□ 0.25
PROM1O43490 MIR5100-201ENST00000579544 119 ntBASIC16.59■□□□□ 0.25
PROM1O43490 CLEC4GP1-201ENST00000596555 870 ntBASIC16.59■□□□□ 0.25
PROM1O43490 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
PROM1O43490 AD001527.2-201ENST00000622994 785 ntBASIC16.59■□□□□ 0.25
PROM1O43490 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.59■□□□□ 0.25
PROM1O43490 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.59■□□□□ 0.25
PROM1O43490 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PROM1O43490 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PROM1O43490 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.59■□□□□ 0.25
PROM1O43490 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.59■□□□□ 0.25
PROM1O43490 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.59■□□□□ 0.25
PROM1O43490 TNRC18P3-201ENST00000441896 2691 ntBASIC16.59■□□□□ 0.25
PROM1O43490 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
PROM1O43490 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PROM1O43490 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PROM1O43490 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms