Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SOX1O00570 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC18.42■□□□□ 0.54
SOX1O00570 ARL16-210ENST00000574938 751 ntTSL 2 BASIC18.42■□□□□ 0.54
SOX1O00570 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
SOX1O00570 AC008494.3-201ENST00000606615 944 ntBASIC18.42■□□□□ 0.54
SOX1O00570 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SOX1O00570 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
SOX1O00570 LINC01006-201ENST00000333319 2292 ntBASIC18.42■□□□□ 0.54
SOX1O00570 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SOX1O00570 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SOX1O00570 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SOX1O00570 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
SOX1O00570 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SOX1O00570 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SOX1O00570 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
SOX1O00570 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SOX1O00570 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SOX1O00570 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
SOX1O00570 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC18.41■□□□□ 0.54
SOX1O00570 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC18.41■□□□□ 0.54
SOX1O00570 GLI4-203ENST00000517468 963 ntTSL 5 BASIC18.41■□□□□ 0.54
SOX1O00570 AP005482.1-201ENST00000563722 1273 ntBASIC18.41■□□□□ 0.54
SOX1O00570 AP000842.3-202ENST00000569238 1080 ntBASIC18.41■□□□□ 0.54
SOX1O00570 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC18.41■□□□□ 0.54
SOX1O00570 RNA5-8SN1-201ENST00000610460 153 ntBASIC18.41■□□□□ 0.54
SOX1O00570 RNA5-8SN5-202ENST00000612463 153 ntBASIC18.41■□□□□ 0.54
SOX1O00570 RNA5-8SN4-201ENST00000613359 153 ntBASIC18.41■□□□□ 0.54
SOX1O00570 AC133552.6-201ENST00000613406 534 ntBASIC18.41■□□□□ 0.54
SOX1O00570 RNA5-8SN5-201ENST00000619471 153 ntBASIC18.41■□□□□ 0.54
SOX1O00570 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SOX1O00570 AC129492.6-201ENST00000611383 1305 ntBASIC18.41■□□□□ 0.54
SOX1O00570 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SOX1O00570 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SOX1O00570 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SOX1O00570 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SOX1O00570 AC100803.2-201ENST00000562459 1963 ntBASIC18.41■□□□□ 0.54
SOX1O00570 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SOX1O00570 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
SOX1O00570 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SOX1O00570 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC18.4■□□□□ 0.54
SOX1O00570 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.4■□□□□ 0.54
SOX1O00570 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SOX1O00570 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SOX1O00570 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SOX1O00570 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SOX1O00570 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SOX1O00570 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.4■□□□□ 0.54
SOX1O00570 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SOX1O00570 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SOX1O00570 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SOX1O00570 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SOX1O00570 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC18.4■□□□□ 0.54
SOX1O00570 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC18.4■□□□□ 0.54
SOX1O00570 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC18.4■□□□□ 0.54
SOX1O00570 RN7SL219P-201ENST00000582872 296 ntBASIC18.4■□□□□ 0.54
SOX1O00570 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC18.4■□□□□ 0.54
SOX1O00570 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SOX1O00570 CHCHD2P3-201ENST00000603038 451 ntBASIC18.4■□□□□ 0.54
SOX1O00570 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SOX1O00570 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SOX1O00570 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC18.4■□□□□ 0.54
SOX1O00570 AC004840.1-201ENST00000636359 365 ntBASIC18.4■□□□□ 0.54
SOX1O00570 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
SOX1O00570 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
SOX1O00570 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SOX1O00570 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SOX1O00570 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SOX1O00570 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
SOX1O00570 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.4■□□□□ 0.54
SOX1O00570 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SOX1O00570 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SOX1O00570 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SOX1O00570 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SOX1O00570 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SOX1O00570 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.4■□□□□ 0.54
SOX1O00570 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
SOX1O00570 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
SOX1O00570 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
SOX1O00570 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
SOX1O00570 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SOX1O00570 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.39■□□□□ 0.53
SOX1O00570 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SOX1O00570 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SOX1O00570 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SOX1O00570 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SOX1O00570 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SOX1O00570 MIR1908-201ENST00000410394 80 ntBASIC18.39■□□□□ 0.53
SOX1O00570 TMEM14DP-201ENST00000422205 345 ntBASIC18.39■□□□□ 0.53
SOX1O00570 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
SOX1O00570 TTTY23B-201ENST00000442790 549 ntBASIC18.39■□□□□ 0.53
SOX1O00570 RN7SL837P-201ENST00000463010 287 ntBASIC18.39■□□□□ 0.53
SOX1O00570 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC18.39■□□□□ 0.53
SOX1O00570 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
SOX1O00570 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC18.39■□□□□ 0.53
SOX1O00570 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SOX1O00570 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
SOX1O00570 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC18.39■□□□□ 0.53
SOX1O00570 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SOX1O00570 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
SOX1O00570 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms