Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 HTR7P1-202ENST00000624664 4411 ntBASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 PTMS-202ENST00000389462 773 ntTSL 2 BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 AP000344.2-201ENST00000512987 629 ntBASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 RNF34-208ENST00000555076 593 ntTSL 3 BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 AC096734.2-201ENST00000562054 433 ntBASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 AC010654.1-201ENST00000615722 808 ntBASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 AC010507.1-201ENST00000633895 436 ntBASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
LIMD1Q9UGP4 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.5
LIMD1Q9UGP4 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 MRPL20P1-201ENST00000400819 433 ntBASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 AC092474.2-201ENST00000424288 719 ntBASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 WBP2-203ENST00000433525 928 ntTSL 2 BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 ACTG1P14-201ENST00000446382 1122 ntBASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 AL353593.2-201ENST00000602529 1483 ntBASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMD1Q9UGP4 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 SIGLEC30P-201ENST00000455569 941 ntBASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 AC074386.1-202ENST00000463561 864 ntBASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 AC025580.3-201ENST00000617932 1424 ntBASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 PC-214ENST00000628663 1470 ntTSL 5 BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.19■□□□□ 0.5
LIMD1Q9UGP4 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms