Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 AC005052.1-201ENST00000625181 2492 ntBASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC28BQ9BUN5 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 AC092850.2-201ENST00000623821 2697 ntBASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 AL603756.1-201ENST00000606511 2163 ntBASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 AL390955.1-201ENST00000428694 934 ntBASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 EGLN1P1-201ENST00000531623 762 ntBASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 AL512604.3-201ENST00000569583 964 ntBASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 AC024563.2-201ENST00000603282 481 ntBASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC28BQ9BUN5 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 AC009154.2-201ENST00000621177 724 ntBASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CCDC28BQ9BUN5 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC28BQ9BUN5 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
CCDC28BQ9BUN5 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC28BQ9BUN5 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC28BQ9BUN5 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC28BQ9BUN5 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
CCDC28BQ9BUN5 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC28BQ9BUN5 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.32
CCDC28BQ9BUN5 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC28BQ9BUN5 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms