Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 AL022342.1-201ENST00000400363 863 ntBASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 KRT18P67-201ENST00000432816 1264 ntBASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 AP001269.4-201ENST00000609611 512 ntBASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CLIP3Q96DZ5 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 FAM220CP-201ENST00000395253 831 ntBASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 ABCD1P5-201ENST00000445663 754 ntBASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 AC093909.1-201ENST00000504731 1122 ntBASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 CICP6-201ENST00000457191 2729 ntBASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CLIP3Q96DZ5 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 AC120114.3-201ENST00000611923 658 ntBASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 REXO1L9P-201ENST00000604264 2108 ntBASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
CLIP3Q96DZ5 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.89■□□□□ 0.3
CLIP3Q96DZ5 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms