Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
RTF1Q92541 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
RTF1Q92541 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC22.79■■□□□ 1.24
RTF1Q92541 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
RTF1Q92541 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
RTF1Q92541 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
RTF1Q92541 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC22.79■■□□□ 1.24
RTF1Q92541 LINC00982-205ENST00000420957 435 ntBASIC22.79■■□□□ 1.24
RTF1Q92541 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
RTF1Q92541 AC108751.1-201ENST00000490852 363 ntBASIC22.79■■□□□ 1.24
RTF1Q92541 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC22.79■■□□□ 1.24
RTF1Q92541 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC22.79■■□□□ 1.24
RTF1Q92541 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC22.79■■□□□ 1.24
RTF1Q92541 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC22.79■■□□□ 1.24
RTF1Q92541 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
RTF1Q92541 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC22.79■■□□□ 1.24
RTF1Q92541 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC22.79■■□□□ 1.24
RTF1Q92541 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC22.79■■□□□ 1.24
RTF1Q92541 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
RTF1Q92541 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC22.79■■□□□ 1.24
RTF1Q92541 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC22.79■■□□□ 1.24
RTF1Q92541 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC22.79■■□□□ 1.24
RTF1Q92541 AC046185.3-201ENST00000623228 1824 ntBASIC22.78■■□□□ 1.24
RTF1Q92541 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
RTF1Q92541 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
RTF1Q92541 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
RTF1Q92541 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
RTF1Q92541 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC22.78■■□□□ 1.24
RTF1Q92541 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
RTF1Q92541 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
RTF1Q92541 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC22.78■■□□□ 1.24
RTF1Q92541 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC22.78■■□□□ 1.24
RTF1Q92541 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
RTF1Q92541 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC22.78■■□□□ 1.24
RTF1Q92541 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC22.78■■□□□ 1.24
RTF1Q92541 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
RTF1Q92541 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC22.77■■□□□ 1.24
RTF1Q92541 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC22.77■■□□□ 1.24
RTF1Q92541 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC22.77■■□□□ 1.24
RTF1Q92541 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC22.77■■□□□ 1.24
RTF1Q92541 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
RTF1Q92541 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC22.77■■□□□ 1.24
RTF1Q92541 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC22.77■■□□□ 1.24
RTF1Q92541 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
RTF1Q92541 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
RTF1Q92541 NEFHP1-201ENST00000412845 2629 ntBASIC22.77■■□□□ 1.24
RTF1Q92541 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
RTF1Q92541 ENSA-206ENST00000361631 725 ntTSL 2 BASIC22.77■■□□□ 1.24
RTF1Q92541 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
RTF1Q92541 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC22.77■■□□□ 1.24
RTF1Q92541 KRT18P3-201ENST00000451602 1288 ntBASIC22.77■■□□□ 1.24
RTF1Q92541 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
RTF1Q92541 RPS15P9-201ENST00000494093 319 ntBASIC22.77■■□□□ 1.24
RTF1Q92541 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC22.77■■□□□ 1.24
RTF1Q92541 AL139327.4-201ENST00000612362 153 ntBASIC22.77■■□□□ 1.24
RTF1Q92541 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC22.77■■□□□ 1.24
RTF1Q92541 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC22.77■■□□□ 1.24
RTF1Q92541 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
RTF1Q92541 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC22.77■■□□□ 1.24
RTF1Q92541 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
RTF1Q92541 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.23
RTF1Q92541 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC22.77■■□□□ 1.23
RTF1Q92541 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC22.77■■□□□ 1.23
RTF1Q92541 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
RTF1Q92541 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC22.76■■□□□ 1.23
RTF1Q92541 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC22.76■■□□□ 1.23
RTF1Q92541 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC22.76■■□□□ 1.23
RTF1Q92541 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
RTF1Q92541 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC22.76■■□□□ 1.23
RTF1Q92541 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC22.76■■□□□ 1.23
RTF1Q92541 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
RTF1Q92541 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
RTF1Q92541 RPP21-221ENST00000428040 594 ntTSL 2 BASIC22.76■■□□□ 1.23
RTF1Q92541 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC22.76■■□□□ 1.23
RTF1Q92541 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
RTF1Q92541 AL353135.1-201ENST00000606729 504 ntBASIC22.76■■□□□ 1.23
RTF1Q92541 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
RTF1Q92541 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
RTF1Q92541 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC22.76■■□□□ 1.23
RTF1Q92541 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC22.76■■□□□ 1.23
RTF1Q92541 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
RTF1Q92541 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC22.76■■□□□ 1.23
RTF1Q92541 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
RTF1Q92541 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC22.76■■□□□ 1.23
RTF1Q92541 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC22.76■■□□□ 1.23
RTF1Q92541 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC22.75■■□□□ 1.23
RTF1Q92541 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
RTF1Q92541 LINC00304-203ENST00000565008 1864 ntBASIC22.75■■□□□ 1.23
RTF1Q92541 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
RTF1Q92541 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
RTF1Q92541 GPR89P-201ENST00000407924 1495 ntBASIC22.75■■□□□ 1.23
RTF1Q92541 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
RTF1Q92541 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC22.75■■□□□ 1.23
RTF1Q92541 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
RTF1Q92541 CRCP-205ENST00000431089 942 ntTSL 2 BASIC22.75■■□□□ 1.23
RTF1Q92541 AC007967.2-201ENST00000432613 625 ntBASIC22.75■■□□□ 1.23
RTF1Q92541 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC22.75■■□□□ 1.23
RTF1Q92541 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC22.75■■□□□ 1.23
RTF1Q92541 HS6ST1P1-201ENST00000481504 1234 ntBASIC22.75■■□□□ 1.23
RTF1Q92541 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms