Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC65Q8IXS2 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC65Q8IXS2 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CCDC65Q8IXS2 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC65Q8IXS2 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC65Q8IXS2 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC65Q8IXS2 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC65Q8IXS2 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.43■□□□□ 0.7
CCDC65Q8IXS2 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
CCDC65Q8IXS2 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
CCDC65Q8IXS2 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC65Q8IXS2 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC65Q8IXS2 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC65Q8IXS2 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
CCDC65Q8IXS2 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC65Q8IXS2 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC65Q8IXS2 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC65Q8IXS2 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC65Q8IXS2 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC65Q8IXS2 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CCDC65Q8IXS2 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CCDC65Q8IXS2 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC65Q8IXS2 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC65Q8IXS2 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC65Q8IXS2 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CCDC65Q8IXS2 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC65Q8IXS2 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC65Q8IXS2 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CCDC65Q8IXS2 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.42■□□□□ 0.7
CCDC65Q8IXS2 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC65Q8IXS2 COX5A-204ENST00000567270 579 ntTSL 3 BASIC19.42■□□□□ 0.7
CCDC65Q8IXS2 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC65Q8IXS2 STK25P1-201ENST00000585406 838 ntBASIC19.42■□□□□ 0.7
CCDC65Q8IXS2 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC65Q8IXS2 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC65Q8IXS2 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC65Q8IXS2 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC65Q8IXS2 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC65Q8IXS2 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
CCDC65Q8IXS2 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC65Q8IXS2 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC65Q8IXS2 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC65Q8IXS2 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC65Q8IXS2 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC65Q8IXS2 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC65Q8IXS2 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC65Q8IXS2 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC65Q8IXS2 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 FUT8-AS1-201ENST00000621019 1521 ntBASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 AD001527.2-201ENST00000622994 785 ntBASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC65Q8IXS2 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC65Q8IXS2 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC65Q8IXS2 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC65Q8IXS2 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC65Q8IXS2 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC65Q8IXS2 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC65Q8IXS2 AC046185.3-201ENST00000623228 1824 ntBASIC19.4■□□□□ 0.7
CCDC65Q8IXS2 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC65Q8IXS2 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC65Q8IXS2 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC65Q8IXS2 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC65Q8IXS2 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC65Q8IXS2 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC65Q8IXS2 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC19.4■□□□□ 0.7
CCDC65Q8IXS2 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC19.4■□□□□ 0.7
CCDC65Q8IXS2 THAP5-204ENST00000438865 868 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC65Q8IXS2 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC65Q8IXS2 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC19.4■□□□□ 0.7
CCDC65Q8IXS2 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC19.4■□□□□ 0.7
CCDC65Q8IXS2 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC65Q8IXS2 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC65Q8IXS2 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC65Q8IXS2 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms