Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
VRK3Q8IV63 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC17.09■□□□□ 0.33
VRK3Q8IV63 SPDYE21P-201ENST00000413323 827 ntBASIC17.09■□□□□ 0.33
VRK3Q8IV63 AF238378.1-201ENST00000526806 358 ntBASIC17.09■□□□□ 0.33
VRK3Q8IV63 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.09■□□□□ 0.33
VRK3Q8IV63 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.09■□□□□ 0.33
VRK3Q8IV63 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VRK3Q8IV63 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VRK3Q8IV63 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.09■□□□□ 0.33
VRK3Q8IV63 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
VRK3Q8IV63 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VRK3Q8IV63 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VRK3Q8IV63 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VRK3Q8IV63 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VRK3Q8IV63 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VRK3Q8IV63 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
VRK3Q8IV63 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VRK3Q8IV63 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VRK3Q8IV63 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
VRK3Q8IV63 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
VRK3Q8IV63 AC012313.1-201ENST00000593393 3059 ntBASIC17.08■□□□□ 0.33
VRK3Q8IV63 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
VRK3Q8IV63 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
VRK3Q8IV63 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VRK3Q8IV63 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VRK3Q8IV63 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VRK3Q8IV63 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VRK3Q8IV63 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VRK3Q8IV63 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
VRK3Q8IV63 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
VRK3Q8IV63 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
VRK3Q8IV63 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.08■□□□□ 0.32
VRK3Q8IV63 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VRK3Q8IV63 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.08■□□□□ 0.32
VRK3Q8IV63 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.08■□□□□ 0.32
VRK3Q8IV63 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.08■□□□□ 0.32
VRK3Q8IV63 EMBP1-201ENST00000458200 901 ntBASIC17.08■□□□□ 0.32
VRK3Q8IV63 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VRK3Q8IV63 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.08■□□□□ 0.32
VRK3Q8IV63 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
VRK3Q8IV63 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
VRK3Q8IV63 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VRK3Q8IV63 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
VRK3Q8IV63 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VRK3Q8IV63 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.08■□□□□ 0.32
VRK3Q8IV63 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.08■□□□□ 0.32
VRK3Q8IV63 MTDHP3-201ENST00000594186 672 ntBASIC17.08■□□□□ 0.32
VRK3Q8IV63 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VRK3Q8IV63 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VRK3Q8IV63 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
VRK3Q8IV63 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
VRK3Q8IV63 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VRK3Q8IV63 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VRK3Q8IV63 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VRK3Q8IV63 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VRK3Q8IV63 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
VRK3Q8IV63 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.08■□□□□ 0.32
VRK3Q8IV63 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VRK3Q8IV63 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.07■□□□□ 0.32
VRK3Q8IV63 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VRK3Q8IV63 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.07■□□□□ 0.32
VRK3Q8IV63 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VRK3Q8IV63 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.07■□□□□ 0.32
VRK3Q8IV63 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VRK3Q8IV63 AC079776.2-201ENST00000641154 1609 ntBASIC17.07■□□□□ 0.32
VRK3Q8IV63 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VRK3Q8IV63 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.07■□□□□ 0.32
VRK3Q8IV63 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VRK3Q8IV63 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VRK3Q8IV63 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.07■□□□□ 0.32
VRK3Q8IV63 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.07■□□□□ 0.32
VRK3Q8IV63 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.07■□□□□ 0.32
VRK3Q8IV63 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VRK3Q8IV63 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VRK3Q8IV63 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VRK3Q8IV63 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VRK3Q8IV63 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
VRK3Q8IV63 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.07■□□□□ 0.32
VRK3Q8IV63 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.07■□□□□ 0.32
VRK3Q8IV63 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VRK3Q8IV63 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VRK3Q8IV63 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.07■□□□□ 0.32
VRK3Q8IV63 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VRK3Q8IV63 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VRK3Q8IV63 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VRK3Q8IV63 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VRK3Q8IV63 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.07■□□□□ 0.32
VRK3Q8IV63 AL355877.3-201ENST00000622820 899 ntBASIC17.07■□□□□ 0.32
VRK3Q8IV63 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.07■□□□□ 0.32
VRK3Q8IV63 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
VRK3Q8IV63 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
VRK3Q8IV63 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
VRK3Q8IV63 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
VRK3Q8IV63 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VRK3Q8IV63 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.07■□□□□ 0.32
VRK3Q8IV63 AL135999.2-201ENST00000622438 1686 ntBASIC17.07■□□□□ 0.32
VRK3Q8IV63 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VRK3Q8IV63 AL023806.1-201ENST00000603994 1649 ntBASIC17.07■□□□□ 0.32
VRK3Q8IV63 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VRK3Q8IV63 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms