Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AL136317.3-201ENST00000618497 906 ntBASIC15.24■□□□□ 0.03
COL8A1P27658 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC15.24■□□□□ 0.03
COL8A1P27658 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL8A1P27658 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL8A1P27658 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL8A1P27658 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL8A1P27658 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL8A1P27658 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL8A1P27658 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL8A1P27658 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL8A1P27658 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
COL8A1P27658 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL8A1P27658 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
COL8A1P27658 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL8A1P27658 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
COL8A1P27658 FO538757.1-201ENST00000623083 1397 ntBASIC15.24■□□□□ 0.03
COL8A1P27658 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL8A1P27658 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL8A1P27658 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL8A1P27658 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL8A1P27658 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
COL8A1P27658 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL8A1P27658 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC15.23■□□□□ 0.03
COL8A1P27658 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.23■□□□□ 0.03
COL8A1P27658 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL8A1P27658 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC15.23■□□□□ 0.03
COL8A1P27658 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.23■□□□□ 0.03
COL8A1P27658 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC15.23■□□□□ 0.03
COL8A1P27658 IGHV3-42-201ENST00000520410 361 ntBASIC15.23■□□□□ 0.03
COL8A1P27658 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
COL8A1P27658 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC15.23■□□□□ 0.03
COL8A1P27658 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.23■□□□□ 0.03
COL8A1P27658 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.23■□□□□ 0.03
COL8A1P27658 AL805961.1-202ENST00000641562 540 ntBASIC15.23■□□□□ 0.03
COL8A1P27658 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL8A1P27658 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
COL8A1P27658 PKD1P1-201ENST00000458669 6805 ntBASIC15.23■□□□□ 0.03
COL8A1P27658 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
COL8A1P27658 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL8A1P27658 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL8A1P27658 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL8A1P27658 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.23■□□□□ 0.03
COL8A1P27658 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC15.23■□□□□ 0.03
COL8A1P27658 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL8A1P27658 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL8A1P27658 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC15.23■□□□□ 0.03
COL8A1P27658 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL8A1P27658 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL8A1P27658 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL8A1P27658 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL8A1P27658 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC15.22■□□□□ 0.03
COL8A1P27658 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
COL8A1P27658 AC132938.5-201ENST00000624980 1813 ntBASIC15.22■□□□□ 0.03
COL8A1P27658 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC15.22■□□□□ 0.03
COL8A1P27658 AC005082.1-201ENST00000413042 2259 ntBASIC15.22■□□□□ 0.03
COL8A1P27658 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC15.22■□□□□ 0.03
COL8A1P27658 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL8A1P27658 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
COL8A1P27658 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL8A1P27658 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL8A1P27658 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL8A1P27658 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL8A1P27658 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.22■□□□□ 0.03
COL8A1P27658 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL8A1P27658 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL8A1P27658 TREML5P-201ENST00000421694 576 ntBASIC15.22■□□□□ 0.03
COL8A1P27658 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.22■□□□□ 0.03
COL8A1P27658 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC15.22■□□□□ 0.03
COL8A1P27658 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL8A1P27658 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC15.22■□□□□ 0.03
COL8A1P27658 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.22■□□□□ 0.03
COL8A1P27658 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
COL8A1P27658 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
COL8A1P27658 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL8A1P27658 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.22■□□□□ 0.03
COL8A1P27658 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL8A1P27658 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
COL8A1P27658 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC15.22■□□□□ 0.03
COL8A1P27658 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC15.22■□□□□ 0.03
COL8A1P27658 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL8A1P27658 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
COL8A1P27658 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL8A1P27658 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL8A1P27658 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL8A1P27658 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
COL8A1P27658 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL8A1P27658 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
COL8A1P27658 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL8A1P27658 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC15.22■□□□□ 0.03
COL8A1P27658 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL8A1P27658 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC15.22■□□□□ 0.03
COL8A1P27658 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL8A1P27658 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL8A1P27658 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC15.22■□□□□ 0.03
COL8A1P27658 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC15.22■□□□□ 0.03
COL8A1P27658 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
COL8A1P27658 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
COL8A1P27658 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL8A1P27658 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
COL8A1P27658 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms