Protein–RNA interactions for Protein: P11387

TOP1, DNA topoisomerase 1, humanhuman

Known RBP Predictions only

Length 765 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP1P11387 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TOP1P11387 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC20.57■□□□□ 0.88
TOP1P11387 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
TOP1P11387 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC20.57■□□□□ 0.88
TOP1P11387 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TOP1P11387 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TOP1P11387 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TOP1P11387 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
TOP1P11387 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TOP1P11387 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
TOP1P11387 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TOP1P11387 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC20.57■□□□□ 0.88
TOP1P11387 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC20.57■□□□□ 0.88
TOP1P11387 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
TOP1P11387 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TOP1P11387 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
TOP1P11387 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TOP1P11387 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TOP1P11387 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TOP1P11387 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TOP1P11387 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TOP1P11387 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
TOP1P11387 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TOP1P11387 AL031284.1-201ENST00000419297 478 ntBASIC20.56■□□□□ 0.88
TOP1P11387 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC20.56■□□□□ 0.88
TOP1P11387 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TOP1P11387 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TOP1P11387 IGHV3-52-201ENST00000519770 353 ntBASIC20.56■□□□□ 0.88
TOP1P11387 PENK-208ENST00000523051 772 ntTSL 5 BASIC20.56■□□□□ 0.88
TOP1P11387 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC20.56■□□□□ 0.88
TOP1P11387 AP001005.1-201ENST00000571755 1248 ntBASIC20.56■□□□□ 0.88
TOP1P11387 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TOP1P11387 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
TOP1P11387 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
TOP1P11387 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TOP1P11387 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TOP1P11387 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TOP1P11387 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TOP1P11387 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC20.56■□□□□ 0.88
TOP1P11387 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TOP1P11387 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC20.56■□□□□ 0.88
TOP1P11387 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TOP1P11387 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC20.56■□□□□ 0.88
TOP1P11387 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
TOP1P11387 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
TOP1P11387 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TOP1P11387 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
TOP1P11387 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC20.55■□□□□ 0.88
TOP1P11387 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
TOP1P11387 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TOP1P11387 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
TOP1P11387 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TOP1P11387 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TOP1P11387 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TOP1P11387 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TOP1P11387 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TOP1P11387 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TOP1P11387 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TOP1P11387 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC20.55■□□□□ 0.88
TOP1P11387 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TOP1P11387 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
TOP1P11387 HNRNPDP1-201ENST00000439535 754 ntBASIC20.55■□□□□ 0.88
TOP1P11387 BX005266.1-201ENST00000473402 457 ntBASIC20.55■□□□□ 0.88
TOP1P11387 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC20.55■□□□□ 0.88
TOP1P11387 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC20.55■□□□□ 0.88
TOP1P11387 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC20.55■□□□□ 0.88
TOP1P11387 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TOP1P11387 WDR88-203ENST00000592765 651 ntTSL 5 BASIC20.55■□□□□ 0.88
TOP1P11387 AC025062.2-201ENST00000605477 670 ntBASIC20.55■□□□□ 0.88
TOP1P11387 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TOP1P11387 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TOP1P11387 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TOP1P11387 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TOP1P11387 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20.55■□□□□ 0.88
TOP1P11387 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TOP1P11387 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
TOP1P11387 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TOP1P11387 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC20.55■□□□□ 0.88
TOP1P11387 AC006116.8-202ENST00000587620 1550 ntBASIC20.55■□□□□ 0.88
TOP1P11387 REXO1L11P-201ENST00000620964 1927 ntBASIC20.55■□□□□ 0.88
TOP1P11387 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TOP1P11387 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC20.54■□□□□ 0.88
TOP1P11387 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
TOP1P11387 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TOP1P11387 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
TOP1P11387 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TOP1P11387 AC003669.1-201ENST00000334569 611 ntBASIC20.54■□□□□ 0.88
TOP1P11387 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC20.54■□□□□ 0.88
TOP1P11387 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
TOP1P11387 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
TOP1P11387 PRYP5-201ENST00000451909 266 ntBASIC20.54■□□□□ 0.88
TOP1P11387 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC20.54■□□□□ 0.88
TOP1P11387 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC20.54■□□□□ 0.88
TOP1P11387 STK25P1-201ENST00000585406 838 ntBASIC20.54■□□□□ 0.88
TOP1P11387 MTDHP4-201ENST00000600287 670 ntBASIC20.54■□□□□ 0.88
TOP1P11387 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC20.54■□□□□ 0.88
TOP1P11387 AL022326.1-202ENST00000641533 845 ntBASIC20.54■□□□□ 0.88
TOP1P11387 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
TOP1P11387 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TOP1P11387 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms