Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.05■□□□□ 0.32
HDAC3O15379 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.05■□□□□ 0.32
HDAC3O15379 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
HDAC3O15379 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
HDAC3O15379 ECEL1P2-202ENST00000465689 757 ntBASIC17.05■□□□□ 0.32
HDAC3O15379 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.05■□□□□ 0.32
HDAC3O15379 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.05■□□□□ 0.32
HDAC3O15379 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.05■□□□□ 0.32
HDAC3O15379 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC3O15379 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC3O15379 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
HDAC3O15379 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC3O15379 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
HDAC3O15379 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.05■□□□□ 0.32
HDAC3O15379 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.05■□□□□ 0.32
HDAC3O15379 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC3O15379 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC3O15379 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC3O15379 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.05■□□□□ 0.32
HDAC3O15379 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.05■□□□□ 0.32
HDAC3O15379 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.05■□□□□ 0.32
HDAC3O15379 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC3O15379 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC3O15379 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HDAC3O15379 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC3O15379 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC3O15379 KRT8P9-201ENST00000558927 1449 ntBASIC17.04■□□□□ 0.32
HDAC3O15379 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC3O15379 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
HDAC3O15379 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
HDAC3O15379 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
HDAC3O15379 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
HDAC3O15379 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
HDAC3O15379 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.04■□□□□ 0.32
HDAC3O15379 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC3O15379 AC092053.1-201ENST00000605787 1936 ntBASIC17.04■□□□□ 0.32
HDAC3O15379 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC3O15379 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.04■□□□□ 0.32
HDAC3O15379 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC3O15379 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC3O15379 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC3O15379 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC3O15379 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.04■□□□□ 0.32
HDAC3O15379 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC3O15379 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC3O15379 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
HDAC3O15379 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC3O15379 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.04■□□□□ 0.32
HDAC3O15379 AC002558.1-201ENST00000488906 803 ntBASIC17.04■□□□□ 0.32
HDAC3O15379 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.04■□□□□ 0.32
HDAC3O15379 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.04■□□□□ 0.32
HDAC3O15379 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.04■□□□□ 0.32
HDAC3O15379 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC3O15379 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC3O15379 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC3O15379 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC3O15379 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.04■□□□□ 0.32
HDAC3O15379 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HDAC3O15379 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.04■□□□□ 0.32
HDAC3O15379 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
HDAC3O15379 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
HDAC3O15379 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.04■□□□□ 0.32
HDAC3O15379 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC3O15379 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC3O15379 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC3O15379 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
HDAC3O15379 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.03■□□□□ 0.32
HDAC3O15379 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
HDAC3O15379 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.03■□□□□ 0.32
HDAC3O15379 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.03■□□□□ 0.32
HDAC3O15379 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC3O15379 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC3O15379 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.03■□□□□ 0.32
HDAC3O15379 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC3O15379 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC3O15379 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC3O15379 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
HDAC3O15379 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC3O15379 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.03■□□□□ 0.32
HDAC3O15379 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.03■□□□□ 0.32
HDAC3O15379 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.03■□□□□ 0.32
HDAC3O15379 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.03■□□□□ 0.32
HDAC3O15379 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.03■□□□□ 0.32
HDAC3O15379 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.03■□□□□ 0.32
HDAC3O15379 GCSHP2-201ENST00000560971 527 ntBASIC17.03■□□□□ 0.32
HDAC3O15379 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.03■□□□□ 0.32
HDAC3O15379 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC3O15379 AL391807.1-203ENST00000604392 2365 ntBASIC17.03■□□□□ 0.32
HDAC3O15379 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC3O15379 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
HDAC3O15379 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC3O15379 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC3O15379 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC3O15379 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC3O15379 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC3O15379 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
HDAC3O15379 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HDAC3O15379 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.03■□□□□ 0.32
HDAC3O15379 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HDAC3O15379 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms