Protein–RNA interactions for Protein: Q9Y2R2

PTPN22, Tyrosine-protein phosphatase non-receptor type 22, humanhuman

Predictions only

Length 807 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN22Q9Y2R2 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
PTPN22Q9Y2R2 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC28.24■■■□□ 2.11
PTPN22Q9Y2R2 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
PTPN22Q9Y2R2 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC28.23■■■□□ 2.11
PTPN22Q9Y2R2 NALT1-201ENST00000429224 738 ntTSL 5 BASIC28.23■■■□□ 2.11
PTPN22Q9Y2R2 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC28.23■■■□□ 2.11
PTPN22Q9Y2R2 UNC93B8-201ENST00000511903 705 ntBASIC28.23■■■□□ 2.11
PTPN22Q9Y2R2 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC28.23■■■□□ 2.11
PTPN22Q9Y2R2 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC28.22■■■□□ 2.11
PTPN22Q9Y2R2 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC28.22■■■□□ 2.11
PTPN22Q9Y2R2 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC28.22■■■□□ 2.11
PTPN22Q9Y2R2 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
PTPN22Q9Y2R2 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
PTPN22Q9Y2R2 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC28.21■■■□□ 2.11
PTPN22Q9Y2R2 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC28.21■■■□□ 2.11
PTPN22Q9Y2R2 AC087393.1-201ENST00000582896 145 ntBASIC28.21■■■□□ 2.11
PTPN22Q9Y2R2 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC28.21■■■□□ 2.11
PTPN22Q9Y2R2 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
PTPN22Q9Y2R2 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC28.2■■■□□ 2.11
PTPN22Q9Y2R2 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC28.2■■■□□ 2.1
PTPN22Q9Y2R2 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC28.2■■■□□ 2.1
PTPN22Q9Y2R2 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
PTPN22Q9Y2R2 KRT16P3-201ENST00000439127 1283 ntBASIC28.2■■■□□ 2.1
PTPN22Q9Y2R2 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC28.2■■■□□ 2.1
PTPN22Q9Y2R2 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC28.2■■■□□ 2.1
PTPN22Q9Y2R2 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
PTPN22Q9Y2R2 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
PTPN22Q9Y2R2 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
PTPN22Q9Y2R2 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
PTPN22Q9Y2R2 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
PTPN22Q9Y2R2 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
PTPN22Q9Y2R2 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC28.19■■■□□ 2.1
PTPN22Q9Y2R2 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC28.18■■■□□ 2.1
PTPN22Q9Y2R2 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
PTPN22Q9Y2R2 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC28.17■■■□□ 2.1
PTPN22Q9Y2R2 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC28.17■■■□□ 2.1
PTPN22Q9Y2R2 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
PTPN22Q9Y2R2 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
PTPN22Q9Y2R2 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
PTPN22Q9Y2R2 BX664725.1-201ENST00000438252 379 ntBASIC28.16■■■□□ 2.1
PTPN22Q9Y2R2 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
PTPN22Q9Y2R2 AC100797.4-201ENST00000631653 1827 ntBASIC28.14■■■□□ 2.1
PTPN22Q9Y2R2 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
PTPN22Q9Y2R2 AP004833.2-201ENST00000532228 1454 ntBASIC28.14■■■□□ 2.09
PTPN22Q9Y2R2 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC28.13■■■□□ 2.09
PTPN22Q9Y2R2 ABCB10P3-201ENST00000561950 2166 ntBASIC28.13■■■□□ 2.09
PTPN22Q9Y2R2 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
PTPN22Q9Y2R2 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
PTPN22Q9Y2R2 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
PTPN22Q9Y2R2 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
PTPN22Q9Y2R2 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC28.11■■■□□ 2.09
PTPN22Q9Y2R2 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC28.11■■■□□ 2.09
PTPN22Q9Y2R2 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC28.11■■■□□ 2.09
PTPN22Q9Y2R2 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC28.1■■■□□ 2.09
PTPN22Q9Y2R2 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC28.1■■■□□ 2.09
PTPN22Q9Y2R2 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC28.1■■■□□ 2.09
PTPN22Q9Y2R2 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC28.1■■■□□ 2.09
PTPN22Q9Y2R2 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC28.1■■■□□ 2.09
PTPN22Q9Y2R2 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
PTPN22Q9Y2R2 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC28.09■■■□□ 2.09
PTPN22Q9Y2R2 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
PTPN22Q9Y2R2 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC28.08■■■□□ 2.09
PTPN22Q9Y2R2 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
PTPN22Q9Y2R2 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC28.08■■■□□ 2.09
PTPN22Q9Y2R2 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
PTPN22Q9Y2R2 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC28.08■■■□□ 2.09
PTPN22Q9Y2R2 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC28.08■■■□□ 2.09
PTPN22Q9Y2R2 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC28.08■■■□□ 2.09
PTPN22Q9Y2R2 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC28.08■■■□□ 2.09
PTPN22Q9Y2R2 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
PTPN22Q9Y2R2 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC28.08■■■□□ 2.09
PTPN22Q9Y2R2 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
PTPN22Q9Y2R2 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
PTPN22Q9Y2R2 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
PTPN22Q9Y2R2 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
PTPN22Q9Y2R2 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC28.07■■■□□ 2.08
PTPN22Q9Y2R2 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC28.07■■■□□ 2.08
PTPN22Q9Y2R2 RPS2P7-201ENST00000447334 885 ntBASIC28.06■■■□□ 2.08
PTPN22Q9Y2R2 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC28.06■■■□□ 2.08
PTPN22Q9Y2R2 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
PTPN22Q9Y2R2 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC28.06■■■□□ 2.08
PTPN22Q9Y2R2 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC28.05■■■□□ 2.08
PTPN22Q9Y2R2 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
PTPN22Q9Y2R2 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
PTPN22Q9Y2R2 AC131281.2-201ENST00000520478 145 ntBASIC28.05■■■□□ 2.08
PTPN22Q9Y2R2 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
PTPN22Q9Y2R2 TRIR-202ENST00000588213 841 ntTSL 3 BASIC28.05■■■□□ 2.08
PTPN22Q9Y2R2 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC28.04■■■□□ 2.08
PTPN22Q9Y2R2 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC28.04■■■□□ 2.08
PTPN22Q9Y2R2 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC28.04■■■□□ 2.08
PTPN22Q9Y2R2 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC28.04■■■□□ 2.08
PTPN22Q9Y2R2 AL359504.2-201ENST00000605506 1601 ntBASIC28.03■■■□□ 2.08
PTPN22Q9Y2R2 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC28.03■■■□□ 2.08
PTPN22Q9Y2R2 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
PTPN22Q9Y2R2 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC28.03■■■□□ 2.08
PTPN22Q9Y2R2 AC092666.2-201ENST00000613287 246 ntBASIC28.03■■■□□ 2.08
PTPN22Q9Y2R2 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC28.03■■■□□ 2.08
PTPN22Q9Y2R2 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
PTPN22Q9Y2R2 AC139426.1-201ENST00000568218 2529 ntBASIC28.02■■■□□ 2.08
PTPN22Q9Y2R2 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC28.02■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms