Protein–RNA interactions for Protein: Q9NP99

TREM1, Triggering receptor expressed on myeloid cells 1, humanhuman

Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREM1Q9NP99 AC142381.3-201ENST00000568208 1670 ntBASIC19.72■□□□□ 0.75
TREM1Q9NP99 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TREM1Q9NP99 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
TREM1Q9NP99 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TREM1Q9NP99 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TREM1Q9NP99 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TREM1Q9NP99 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
TREM1Q9NP99 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TREM1Q9NP99 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TREM1Q9NP99 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TREM1Q9NP99 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TREM1Q9NP99 AL139125.2-201ENST00000623134 1869 ntBASIC19.71■□□□□ 0.75
TREM1Q9NP99 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TREM1Q9NP99 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TREM1Q9NP99 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC19.7■□□□□ 0.74
TREM1Q9NP99 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
TREM1Q9NP99 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
TREM1Q9NP99 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TREM1Q9NP99 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TREM1Q9NP99 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC19.69■□□□□ 0.74
TREM1Q9NP99 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TREM1Q9NP99 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TREM1Q9NP99 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TREM1Q9NP99 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TREM1Q9NP99 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.69■□□□□ 0.74
TREM1Q9NP99 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TREM1Q9NP99 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TREM1Q9NP99 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TREM1Q9NP99 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TREM1Q9NP99 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TREM1Q9NP99 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TREM1Q9NP99 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC19.68■□□□□ 0.74
TREM1Q9NP99 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TREM1Q9NP99 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC19.68■□□□□ 0.74
TREM1Q9NP99 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TREM1Q9NP99 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.67■□□□□ 0.74
TREM1Q9NP99 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC19.67■□□□□ 0.74
TREM1Q9NP99 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
TREM1Q9NP99 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
TREM1Q9NP99 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TREM1Q9NP99 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TREM1Q9NP99 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC19.66■□□□□ 0.74
TREM1Q9NP99 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TREM1Q9NP99 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TREM1Q9NP99 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TREM1Q9NP99 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TREM1Q9NP99 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC19.66■□□□□ 0.74
TREM1Q9NP99 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC19.66■□□□□ 0.74
TREM1Q9NP99 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TREM1Q9NP99 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC19.66■□□□□ 0.74
TREM1Q9NP99 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC19.65■□□□□ 0.74
TREM1Q9NP99 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TREM1Q9NP99 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
TREM1Q9NP99 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
TREM1Q9NP99 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
TREM1Q9NP99 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
TREM1Q9NP99 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TREM1Q9NP99 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
TREM1Q9NP99 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
TREM1Q9NP99 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.74
TREM1Q9NP99 WASH5P-204ENST00000632292 975 ntBASIC19.64■□□□□ 0.73
TREM1Q9NP99 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
TREM1Q9NP99 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
TREM1Q9NP99 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
TREM1Q9NP99 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TREM1Q9NP99 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
TREM1Q9NP99 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
TREM1Q9NP99 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TREM1Q9NP99 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
TREM1Q9NP99 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC19.62■□□□□ 0.73
TREM1Q9NP99 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TREM1Q9NP99 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TREM1Q9NP99 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TREM1Q9NP99 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TREM1Q9NP99 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
TREM1Q9NP99 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TREM1Q9NP99 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
TREM1Q9NP99 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TREM1Q9NP99 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TREM1Q9NP99 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TREM1Q9NP99 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TREM1Q9NP99 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
TREM1Q9NP99 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC19.6■□□□□ 0.73
TREM1Q9NP99 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC19.6■□□□□ 0.73
TREM1Q9NP99 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
TREM1Q9NP99 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC19.59■□□□□ 0.73
TREM1Q9NP99 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TREM1Q9NP99 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TREM1Q9NP99 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TREM1Q9NP99 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TREM1Q9NP99 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TREM1Q9NP99 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
TREM1Q9NP99 AC100797.4-201ENST00000631653 1827 ntBASIC19.58■□□□□ 0.73
TREM1Q9NP99 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
TREM1Q9NP99 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TREM1Q9NP99 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TREM1Q9NP99 AP002414.2-202ENST00000590929 1450 ntBASIC19.58■□□□□ 0.72
TREM1Q9NP99 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC19.58■□□□□ 0.72
TREM1Q9NP99 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TREM1Q9NP99 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms