Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
VRK1Q99986 HYI-213ENST00000583037 1322 ntTSL 5 BASIC21.28■■□□□ 1
VRK1Q99986 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
VRK1Q99986 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VRK1Q99986 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.27■■□□□ 1
VRK1Q99986 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.27■■□□□ 1
VRK1Q99986 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VRK1Q99986 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
VRK1Q99986 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC21.25■□□□□ 0.99
VRK1Q99986 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
VRK1Q99986 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.25■□□□□ 0.99
VRK1Q99986 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.25■□□□□ 0.99
VRK1Q99986 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
VRK1Q99986 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
VRK1Q99986 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
VRK1Q99986 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
VRK1Q99986 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC21.24■□□□□ 0.99
VRK1Q99986 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC21.24■□□□□ 0.99
VRK1Q99986 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
VRK1Q99986 SNAI3-AS1-204ENST00000567997 2048 ntBASIC21.24■□□□□ 0.99
VRK1Q99986 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
VRK1Q99986 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC21.24■□□□□ 0.99
VRK1Q99986 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VRK1Q99986 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VRK1Q99986 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC21.23■□□□□ 0.99
VRK1Q99986 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VRK1Q99986 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC21.23■□□□□ 0.99
VRK1Q99986 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
VRK1Q99986 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC21.23■□□□□ 0.99
VRK1Q99986 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC21.23■□□□□ 0.99
VRK1Q99986 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VRK1Q99986 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC21.22■□□□□ 0.99
VRK1Q99986 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC21.22■□□□□ 0.99
VRK1Q99986 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
VRK1Q99986 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VRK1Q99986 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VRK1Q99986 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VRK1Q99986 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VRK1Q99986 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC21.21■□□□□ 0.99
VRK1Q99986 U85056.1-201ENST00000616429 682 ntBASIC21.21■□□□□ 0.99
VRK1Q99986 AC012354.3-201ENST00000623734 483 ntBASIC21.21■□□□□ 0.99
VRK1Q99986 REST-210ENST00000638187 1334 ntTSL 5 BASIC21.21■□□□□ 0.99
VRK1Q99986 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VRK1Q99986 AL157400.5-201ENST00000507624 621 ntBASIC21.2■□□□□ 0.98
VRK1Q99986 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VRK1Q99986 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC21.2■□□□□ 0.98
VRK1Q99986 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
VRK1Q99986 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC21.2■□□□□ 0.98
VRK1Q99986 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
VRK1Q99986 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VRK1Q99986 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
VRK1Q99986 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
VRK1Q99986 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC21.18■□□□□ 0.98
VRK1Q99986 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC21.18■□□□□ 0.98
VRK1Q99986 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VRK1Q99986 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
VRK1Q99986 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VRK1Q99986 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC21.17■□□□□ 0.98
VRK1Q99986 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VRK1Q99986 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC21.17■□□□□ 0.98
VRK1Q99986 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VRK1Q99986 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC21.17■□□□□ 0.98
VRK1Q99986 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.17■□□□□ 0.98
VRK1Q99986 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
VRK1Q99986 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
VRK1Q99986 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
VRK1Q99986 LINC01003-201ENST00000564834 1764 ntBASIC21.16■□□□□ 0.98
VRK1Q99986 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VRK1Q99986 SMPD5-203ENST00000639008 1464 ntBASIC21.16■□□□□ 0.98
VRK1Q99986 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VRK1Q99986 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
VRK1Q99986 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VRK1Q99986 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VRK1Q99986 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC21.15■□□□□ 0.98
VRK1Q99986 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
VRK1Q99986 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VRK1Q99986 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
VRK1Q99986 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VRK1Q99986 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
VRK1Q99986 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
VRK1Q99986 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VRK1Q99986 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC21.14■□□□□ 0.97
VRK1Q99986 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VRK1Q99986 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC21.14■□□□□ 0.97
VRK1Q99986 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC21.14■□□□□ 0.97
VRK1Q99986 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
VRK1Q99986 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
VRK1Q99986 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
VRK1Q99986 AC007029.1-201ENST00000604183 313 ntBASIC21.13■□□□□ 0.97
VRK1Q99986 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VRK1Q99986 AC018358.1-201ENST00000631079 1402 ntBASIC21.12■□□□□ 0.97
VRK1Q99986 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC21.12■□□□□ 0.97
VRK1Q99986 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VRK1Q99986 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
VRK1Q99986 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
VRK1Q99986 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VRK1Q99986 AL033527.3-201ENST00000566366 1196 ntBASIC21.12■□□□□ 0.97
VRK1Q99986 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VRK1Q99986 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VRK1Q99986 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms