Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
VPS13AQ96RL7 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC24.62■■□□□ 1.53
VPS13AQ96RL7 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
VPS13AQ96RL7 MIR4466-201ENST00000606121 54 ntBASIC24.62■■□□□ 1.53
VPS13AQ96RL7 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC24.61■■□□□ 1.53
VPS13AQ96RL7 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
VPS13AQ96RL7 AC133561.4-201ENST00000566112 224 ntBASIC24.61■■□□□ 1.53
VPS13AQ96RL7 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC24.6■■□□□ 1.53
VPS13AQ96RL7 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC24.6■■□□□ 1.53
VPS13AQ96RL7 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
VPS13AQ96RL7 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC24.6■■□□□ 1.53
VPS13AQ96RL7 AC087393.1-201ENST00000582896 145 ntBASIC24.6■■□□□ 1.53
VPS13AQ96RL7 TRIR-202ENST00000588213 841 ntTSL 3 BASIC24.6■■□□□ 1.53
VPS13AQ96RL7 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
VPS13AQ96RL7 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC24.6■■□□□ 1.53
VPS13AQ96RL7 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC24.59■■□□□ 1.53
VPS13AQ96RL7 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC24.59■■□□□ 1.53
VPS13AQ96RL7 KRT16P3-201ENST00000439127 1283 ntBASIC24.59■■□□□ 1.53
VPS13AQ96RL7 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC24.59■■□□□ 1.53
VPS13AQ96RL7 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC24.59■■□□□ 1.53
VPS13AQ96RL7 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC24.59■■□□□ 1.53
VPS13AQ96RL7 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
VPS13AQ96RL7 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
VPS13AQ96RL7 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC24.58■■□□□ 1.53
VPS13AQ96RL7 AC022616.5-201ENST00000518796 181 ntBASIC24.58■■□□□ 1.53
VPS13AQ96RL7 AC104564.3-201ENST00000582367 638 ntBASIC24.58■■□□□ 1.53
VPS13AQ96RL7 AL136116.3-201ENST00000402907 1138 ntBASIC24.58■■□□□ 1.52
VPS13AQ96RL7 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC24.58■■□□□ 1.52
VPS13AQ96RL7 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC24.58■■□□□ 1.52
VPS13AQ96RL7 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
VPS13AQ96RL7 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
VPS13AQ96RL7 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
VPS13AQ96RL7 ABCB10P3-201ENST00000561950 2166 ntBASIC24.56■■□□□ 1.52
VPS13AQ96RL7 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
VPS13AQ96RL7 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC24.56■■□□□ 1.52
VPS13AQ96RL7 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC24.56■■□□□ 1.52
VPS13AQ96RL7 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
VPS13AQ96RL7 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC24.56■■□□□ 1.52
VPS13AQ96RL7 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC24.56■■□□□ 1.52
VPS13AQ96RL7 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
VPS13AQ96RL7 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC24.55■■□□□ 1.52
VPS13AQ96RL7 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
VPS13AQ96RL7 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
VPS13AQ96RL7 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
VPS13AQ96RL7 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
VPS13AQ96RL7 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC24.54■■□□□ 1.52
VPS13AQ96RL7 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC24.54■■□□□ 1.52
VPS13AQ96RL7 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
VPS13AQ96RL7 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
VPS13AQ96RL7 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
VPS13AQ96RL7 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC24.53■■□□□ 1.52
VPS13AQ96RL7 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC24.53■■□□□ 1.52
VPS13AQ96RL7 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC24.53■■□□□ 1.52
VPS13AQ96RL7 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
VPS13AQ96RL7 BX664725.1-201ENST00000438252 379 ntBASIC24.52■■□□□ 1.52
VPS13AQ96RL7 AC096631.2-201ENST00000436136 790 ntBASIC24.52■■□□□ 1.52
VPS13AQ96RL7 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
VPS13AQ96RL7 AC135279.3-201ENST00000610945 1311 ntBASIC24.51■■□□□ 1.51
VPS13AQ96RL7 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC24.51■■□□□ 1.51
VPS13AQ96RL7 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
VPS13AQ96RL7 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
VPS13AQ96RL7 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC24.51■■□□□ 1.51
VPS13AQ96RL7 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC24.51■■□□□ 1.51
VPS13AQ96RL7 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
VPS13AQ96RL7 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
VPS13AQ96RL7 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
VPS13AQ96RL7 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
VPS13AQ96RL7 GUK1-205ENST00000366722 850 ntTSL 3 BASIC24.5■■□□□ 1.51
VPS13AQ96RL7 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC24.5■■□□□ 1.51
VPS13AQ96RL7 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
VPS13AQ96RL7 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
VPS13AQ96RL7 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
VPS13AQ96RL7 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
VPS13AQ96RL7 EBPL-204ENST00000378272 766 ntTSL 3 BASIC24.5■■□□□ 1.51
VPS13AQ96RL7 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC24.5■■□□□ 1.51
VPS13AQ96RL7 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC24.49■■□□□ 1.51
VPS13AQ96RL7 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
VPS13AQ96RL7 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
VPS13AQ96RL7 AL359504.2-201ENST00000605506 1601 ntBASIC24.49■■□□□ 1.51
VPS13AQ96RL7 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC24.49■■□□□ 1.51
VPS13AQ96RL7 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC24.49■■□□□ 1.51
VPS13AQ96RL7 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 MIR5787-201ENST00000611784 55 ntBASIC24.48■■□□□ 1.51
VPS13AQ96RL7 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC24.48■■□□□ 1.51
VPS13AQ96RL7 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC24.47■■□□□ 1.51
VPS13AQ96RL7 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC24.47■■□□□ 1.51
VPS13AQ96RL7 ST7-AS1-201ENST00000456775 1889 ntBASIC24.47■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms