Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CLRN3Q8NCR9 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CLRN3Q8NCR9 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
CLRN3Q8NCR9 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLRN3Q8NCR9 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CLRN3Q8NCR9 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.44■□□□□ 0.7
CLRN3Q8NCR9 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.44■□□□□ 0.7
CLRN3Q8NCR9 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CLRN3Q8NCR9 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLRN3Q8NCR9 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CLRN3Q8NCR9 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CLRN3Q8NCR9 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC19.43■□□□□ 0.7
CLRN3Q8NCR9 C9orf163-202ENST00000624034 2573 ntBASIC19.43■□□□□ 0.7
CLRN3Q8NCR9 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CLRN3Q8NCR9 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLRN3Q8NCR9 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLRN3Q8NCR9 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLRN3Q8NCR9 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLRN3Q8NCR9 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLRN3Q8NCR9 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC19.41■□□□□ 0.7
CLRN3Q8NCR9 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLRN3Q8NCR9 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC19.41■□□□□ 0.7
CLRN3Q8NCR9 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CLRN3Q8NCR9 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLRN3Q8NCR9 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLRN3Q8NCR9 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLRN3Q8NCR9 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLRN3Q8NCR9 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLRN3Q8NCR9 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLRN3Q8NCR9 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLRN3Q8NCR9 AC010864.1-201ENST00000609407 1511 ntBASIC19.4■□□□□ 0.7
CLRN3Q8NCR9 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CLRN3Q8NCR9 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CLRN3Q8NCR9 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
CLRN3Q8NCR9 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CLRN3Q8NCR9 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLRN3Q8NCR9 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLRN3Q8NCR9 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
CLRN3Q8NCR9 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CLRN3Q8NCR9 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
CLRN3Q8NCR9 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLRN3Q8NCR9 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
CLRN3Q8NCR9 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
CLRN3Q8NCR9 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC19.37■□□□□ 0.69
CLRN3Q8NCR9 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLRN3Q8NCR9 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC19.36■□□□□ 0.69
CLRN3Q8NCR9 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.36■□□□□ 0.69
CLRN3Q8NCR9 ABCB10P4-201ENST00000566803 2184 ntBASIC19.36■□□□□ 0.69
CLRN3Q8NCR9 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CLRN3Q8NCR9 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLRN3Q8NCR9 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLRN3Q8NCR9 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLRN3Q8NCR9 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC19.36■□□□□ 0.69
CLRN3Q8NCR9 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC19.36■□□□□ 0.69
CLRN3Q8NCR9 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC19.35■□□□□ 0.69
CLRN3Q8NCR9 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLRN3Q8NCR9 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.35■□□□□ 0.69
CLRN3Q8NCR9 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
CLRN3Q8NCR9 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC19.35■□□□□ 0.69
CLRN3Q8NCR9 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
CLRN3Q8NCR9 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLRN3Q8NCR9 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLRN3Q8NCR9 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLRN3Q8NCR9 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLRN3Q8NCR9 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLRN3Q8NCR9 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLRN3Q8NCR9 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLRN3Q8NCR9 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC19.34■□□□□ 0.69
CLRN3Q8NCR9 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLRN3Q8NCR9 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CLRN3Q8NCR9 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CLRN3Q8NCR9 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CLRN3Q8NCR9 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC19.33■□□□□ 0.69
CLRN3Q8NCR9 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLRN3Q8NCR9 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
CLRN3Q8NCR9 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.33■□□□□ 0.68
CLRN3Q8NCR9 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLRN3Q8NCR9 AC138932.3-201ENST00000567634 1902 ntBASIC19.32■□□□□ 0.68
CLRN3Q8NCR9 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CLRN3Q8NCR9 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLRN3Q8NCR9 AC006077.2-201ENST00000623591 457 ntBASIC19.32■□□□□ 0.68
CLRN3Q8NCR9 LINC00565-201ENST00000562710 2331 ntBASIC19.32■□□□□ 0.68
CLRN3Q8NCR9 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLRN3Q8NCR9 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLRN3Q8NCR9 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLRN3Q8NCR9 DUSP8P5-201ENST00000422884 1815 ntBASIC19.32■□□□□ 0.68
CLRN3Q8NCR9 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLRN3Q8NCR9 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC19.32■□□□□ 0.68
CLRN3Q8NCR9 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLRN3Q8NCR9 AL117328.2-201ENST00000624617 1940 ntBASIC19.31■□□□□ 0.68
CLRN3Q8NCR9 C1orf229-201ENST00000623686 2258 ntBASIC19.31■□□□□ 0.68
CLRN3Q8NCR9 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLRN3Q8NCR9 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLRN3Q8NCR9 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLRN3Q8NCR9 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLRN3Q8NCR9 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLRN3Q8NCR9 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CLRN3Q8NCR9 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC19.31■□□□□ 0.68
CLRN3Q8NCR9 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLRN3Q8NCR9 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms