Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC32.02■■■□□ 2.72
NCBP3Q53F19 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC32.01■■■□□ 2.72
NCBP3Q53F19 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
NCBP3Q53F19 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
NCBP3Q53F19 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC32.01■■■□□ 2.71
NCBP3Q53F19 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC32■■■□□ 2.71
NCBP3Q53F19 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
NCBP3Q53F19 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC32■■■□□ 2.71
NCBP3Q53F19 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC32■■■□□ 2.71
NCBP3Q53F19 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC32■■■□□ 2.71
NCBP3Q53F19 GFER-205ENST00000569451 517 ntTSL 5 BASIC32■■■□□ 2.71
NCBP3Q53F19 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
NCBP3Q53F19 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
NCBP3Q53F19 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
NCBP3Q53F19 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
NCBP3Q53F19 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
NCBP3Q53F19 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
NCBP3Q53F19 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
NCBP3Q53F19 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC31.98■■■□□ 2.71
NCBP3Q53F19 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
NCBP3Q53F19 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC31.97■■■□□ 2.71
NCBP3Q53F19 AC007029.1-201ENST00000604183 313 ntBASIC31.97■■■□□ 2.71
NCBP3Q53F19 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
NCBP3Q53F19 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
NCBP3Q53F19 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
NCBP3Q53F19 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
NCBP3Q53F19 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
NCBP3Q53F19 HSD17B1P1-201ENST00000590052 955 ntBASIC31.96■■■□□ 2.71
NCBP3Q53F19 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
NCBP3Q53F19 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC31.96■■■□□ 2.71
NCBP3Q53F19 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
NCBP3Q53F19 CREM-210ENST00000374721 2020 ntTSL 5 BASIC31.95■■■□□ 2.71
NCBP3Q53F19 AC091060.1-201ENST00000623524 1766 ntBASIC31.95■■■□□ 2.71
NCBP3Q53F19 RP9P-202ENST00000450133 1212 ntBASIC31.95■■■□□ 2.71
NCBP3Q53F19 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC31.94■■■□□ 2.7
NCBP3Q53F19 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC31.94■■■□□ 2.7
NCBP3Q53F19 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
NCBP3Q53F19 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC31.94■■■□□ 2.7
NCBP3Q53F19 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
NCBP3Q53F19 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
NCBP3Q53F19 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
NCBP3Q53F19 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC31.94■■■□□ 2.7
NCBP3Q53F19 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC31.94■■■□□ 2.7
NCBP3Q53F19 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
NCBP3Q53F19 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC31.93■■■□□ 2.7
NCBP3Q53F19 DUSP8P4-201ENST00000399538 1761 ntBASIC31.93■■■□□ 2.7
NCBP3Q53F19 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
NCBP3Q53F19 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
NCBP3Q53F19 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC31.92■■■□□ 2.7
NCBP3Q53F19 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC31.92■■■□□ 2.7
NCBP3Q53F19 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC31.92■■■□□ 2.7
NCBP3Q53F19 AC092803.2-201ENST00000564287 1899 ntBASIC31.92■■■□□ 2.7
NCBP3Q53F19 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC31.92■■■□□ 2.7
NCBP3Q53F19 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC31.92■■■□□ 2.7
NCBP3Q53F19 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
NCBP3Q53F19 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC31.91■■■□□ 2.7
NCBP3Q53F19 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
NCBP3Q53F19 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC31.9■■■□□ 2.7
NCBP3Q53F19 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
NCBP3Q53F19 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC31.89■■■□□ 2.7
NCBP3Q53F19 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
NCBP3Q53F19 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
NCBP3Q53F19 RAP2CP1-202ENST00000605179 643 ntBASIC31.88■■■□□ 2.69
NCBP3Q53F19 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC31.88■■■□□ 2.69
NCBP3Q53F19 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC31.88■■■□□ 2.69
NCBP3Q53F19 AC145676.1-201ENST00000514988 2004 ntBASIC31.88■■■□□ 2.69
NCBP3Q53F19 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
NCBP3Q53F19 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC31.87■■■□□ 2.69
NCBP3Q53F19 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC31.87■■■□□ 2.69
NCBP3Q53F19 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC31.86■■■□□ 2.69
NCBP3Q53F19 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
NCBP3Q53F19 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
NCBP3Q53F19 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC31.85■■■□□ 2.69
NCBP3Q53F19 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC31.85■■■□□ 2.69
NCBP3Q53F19 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC31.84■■■□□ 2.69
NCBP3Q53F19 RARRES2P2-201ENST00000394842 485 ntBASIC31.84■■■□□ 2.69
NCBP3Q53F19 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC31.84■■■□□ 2.69
NCBP3Q53F19 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC31.84■■■□□ 2.69
NCBP3Q53F19 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
NCBP3Q53F19 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC31.84■■■□□ 2.69
NCBP3Q53F19 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
NCBP3Q53F19 AC026202.3-201ENST00000600805 1127 ntBASIC31.83■■■□□ 2.69
NCBP3Q53F19 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC31.83■■■□□ 2.69
NCBP3Q53F19 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC31.82■■■□□ 2.68
NCBP3Q53F19 AC093536.1-201ENST00000569153 554 ntBASIC31.82■■■□□ 2.68
NCBP3Q53F19 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
NCBP3Q53F19 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC31.81■■■□□ 2.68
NCBP3Q53F19 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
NCBP3Q53F19 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
NCBP3Q53F19 AC010501.1-201ENST00000606270 1962 ntBASIC31.81■■■□□ 2.68
NCBP3Q53F19 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
NCBP3Q53F19 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
NCBP3Q53F19 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
NCBP3Q53F19 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC31.79■■■□□ 2.68
NCBP3Q53F19 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
NCBP3Q53F19 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC31.79■■■□□ 2.68
NCBP3Q53F19 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC31.78■■■□□ 2.68
NCBP3Q53F19 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
NCBP3Q53F19 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
NCBP3Q53F19 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC31.78■■■□□ 2.68
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms