Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC21.28■■□□□ 1
SOX2P48431 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC21.28■■□□□ 1
SOX2P48431 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SOX2P48431 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
SOX2P48431 RPS2-210ENST00000530225 765 ntTSL 2 BASIC21.28■■□□□ 1
SOX2P48431 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SOX2P48431 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.28■■□□□ 1
SOX2P48431 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
SOX2P48431 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC21.27■■□□□ 1
SOX2P48431 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC21.26■□□□□ 0.99
SOX2P48431 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SOX2P48431 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SOX2P48431 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SOX2P48431 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC21.26■□□□□ 0.99
SOX2P48431 DUX4L29-201ENST00000425409 679 ntBASIC21.26■□□□□ 0.99
SOX2P48431 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SOX2P48431 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SOX2P48431 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SOX2P48431 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
SOX2P48431 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC21.25■□□□□ 0.99
SOX2P48431 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC21.25■□□□□ 0.99
SOX2P48431 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SOX2P48431 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
SOX2P48431 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SOX2P48431 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
SOX2P48431 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
SOX2P48431 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SOX2P48431 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SOX2P48431 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.22■□□□□ 0.99
SOX2P48431 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SOX2P48431 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
SOX2P48431 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SOX2P48431 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SOX2P48431 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SOX2P48431 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
SOX2P48431 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SOX2P48431 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
SOX2P48431 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC21.2■□□□□ 0.98
SOX2P48431 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SOX2P48431 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SOX2P48431 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC21.2■□□□□ 0.98
SOX2P48431 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SOX2P48431 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SOX2P48431 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SOX2P48431 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SOX2P48431 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SOX2P48431 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC21.19■□□□□ 0.98
SOX2P48431 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC21.19■□□□□ 0.98
SOX2P48431 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC21.19■□□□□ 0.98
SOX2P48431 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
SOX2P48431 AC142381.3-201ENST00000568208 1670 ntBASIC21.18■□□□□ 0.98
SOX2P48431 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SOX2P48431 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SOX2P48431 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.18■□□□□ 0.98
SOX2P48431 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC21.18■□□□□ 0.98
SOX2P48431 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SOX2P48431 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SOX2P48431 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SOX2P48431 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SOX2P48431 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC21.17■□□□□ 0.98
SOX2P48431 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
SOX2P48431 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SOX2P48431 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC21.17■□□□□ 0.98
SOX2P48431 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC21.17■□□□□ 0.98
SOX2P48431 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
SOX2P48431 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SOX2P48431 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SOX2P48431 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SOX2P48431 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
SOX2P48431 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SOX2P48431 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC21.16■□□□□ 0.98
SOX2P48431 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC21.16■□□□□ 0.98
SOX2P48431 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
SOX2P48431 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
SOX2P48431 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SOX2P48431 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SOX2P48431 CHML-204ENST00000638121 920 ntTSL 2 BASIC21.15■□□□□ 0.98
SOX2P48431 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SOX2P48431 AC022211.4-201ENST00000625094 2161 ntBASIC21.14■□□□□ 0.98
SOX2P48431 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
SOX2P48431 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SOX2P48431 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SOX2P48431 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
SOX2P48431 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SOX2P48431 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC21.13■□□□□ 0.97
SOX2P48431 AC138932.3-201ENST00000567634 1902 ntBASIC21.13■□□□□ 0.97
SOX2P48431 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC21.13■□□□□ 0.97
SOX2P48431 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SOX2P48431 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.12■□□□□ 0.97
SOX2P48431 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SOX2P48431 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SOX2P48431 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SOX2P48431 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SOX2P48431 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC21.12■□□□□ 0.97
SOX2P48431 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SOX2P48431 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.12■□□□□ 0.97
SOX2P48431 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
SOX2P48431 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SOX2P48431 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SOX2P48431 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms