Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
TPM1P09493 RARA-203ENST00000394086 2008 ntTSL 2 BASIC26.62■■□□□ 1.85
TPM1P09493 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
TPM1P09493 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC26.62■■□□□ 1.85
TPM1P09493 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
TPM1P09493 RPS2-210ENST00000530225 765 ntTSL 2 BASIC26.61■■□□□ 1.85
TPM1P09493 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
TPM1P09493 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC26.6■■□□□ 1.85
TPM1P09493 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
TPM1P09493 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
TPM1P09493 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC26.59■■□□□ 1.85
TPM1P09493 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
TPM1P09493 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
TPM1P09493 BOD1-206ENST00000480951 814 ntTSL 2 BASIC26.59■■□□□ 1.85
TPM1P09493 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
TPM1P09493 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
TPM1P09493 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
TPM1P09493 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
TPM1P09493 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
TPM1P09493 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
TPM1P09493 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC26.57■■□□□ 1.84
TPM1P09493 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC26.57■■□□□ 1.84
TPM1P09493 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC26.57■■□□□ 1.84
TPM1P09493 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC26.57■■□□□ 1.84
TPM1P09493 ERN1-208ENST00000606895 2068 ntBASIC26.57■■□□□ 1.84
TPM1P09493 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC26.56■■□□□ 1.84
TPM1P09493 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
TPM1P09493 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
TPM1P09493 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
TPM1P09493 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
TPM1P09493 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC26.55■■□□□ 1.84
TPM1P09493 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC26.55■■□□□ 1.84
TPM1P09493 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
TPM1P09493 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
TPM1P09493 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
TPM1P09493 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
TPM1P09493 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
TPM1P09493 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
TPM1P09493 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
TPM1P09493 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC26.54■■□□□ 1.84
TPM1P09493 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
TPM1P09493 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
TPM1P09493 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC26.53■■□□□ 1.84
TPM1P09493 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
TPM1P09493 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC26.53■■□□□ 1.84
TPM1P09493 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
TPM1P09493 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC26.53■■□□□ 1.84
TPM1P09493 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
TPM1P09493 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
TPM1P09493 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
TPM1P09493 NRG1-221ENST00000614767 762 ntTSL 5 BASIC26.52■■□□□ 1.84
TPM1P09493 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC26.52■■□□□ 1.84
TPM1P09493 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
TPM1P09493 DUX4L29-201ENST00000425409 679 ntBASIC26.51■■□□□ 1.83
TPM1P09493 AL162393.1-201ENST00000437852 946 ntBASIC26.51■■□□□ 1.83
TPM1P09493 AC021231.2-201ENST00000594613 730 ntBASIC26.51■■□□□ 1.83
TPM1P09493 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
TPM1P09493 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
TPM1P09493 AC142381.3-201ENST00000568208 1670 ntBASIC26.5■■□□□ 1.83
TPM1P09493 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
TPM1P09493 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
TPM1P09493 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
TPM1P09493 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC26.5■■□□□ 1.83
TPM1P09493 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC26.5■■□□□ 1.83
TPM1P09493 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
TPM1P09493 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC26.49■■□□□ 1.83
TPM1P09493 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC26.49■■□□□ 1.83
TPM1P09493 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC26.49■■□□□ 1.83
TPM1P09493 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC26.49■■□□□ 1.83
TPM1P09493 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC26.48■■□□□ 1.83
TPM1P09493 THRA-202ENST00000394121 2260 ntTSL 2 BASIC26.48■■□□□ 1.83
TPM1P09493 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC26.48■■□□□ 1.83
TPM1P09493 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
TPM1P09493 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC26.48■■□□□ 1.83
TPM1P09493 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
TPM1P09493 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
TPM1P09493 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
TPM1P09493 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC26.47■■□□□ 1.83
TPM1P09493 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
TPM1P09493 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
TPM1P09493 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC26.47■■□□□ 1.83
TPM1P09493 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
TPM1P09493 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC26.47■■□□□ 1.83
TPM1P09493 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
TPM1P09493 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
TPM1P09493 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
TPM1P09493 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC26.46■■□□□ 1.83
TPM1P09493 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
TPM1P09493 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
TPM1P09493 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC26.45■■□□□ 1.83
TPM1P09493 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC26.45■■□□□ 1.82
TPM1P09493 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC26.44■■□□□ 1.82
TPM1P09493 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC26.44■■□□□ 1.82
TPM1P09493 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC26.44■■□□□ 1.82
TPM1P09493 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
TPM1P09493 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC26.44■■□□□ 1.82
TPM1P09493 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
TPM1P09493 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC26.43■■□□□ 1.82
TPM1P09493 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC26.43■■□□□ 1.82
TPM1P09493 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC26.43■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms