Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
ABCA1O95477 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.43■□□□□ 0.86
ABCA1O95477 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ABCA1O95477 AL356441.2-201ENST00000443009 864 ntBASIC20.43■□□□□ 0.86
ABCA1O95477 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ABCA1O95477 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ABCA1O95477 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
ABCA1O95477 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ABCA1O95477 IDNK-201ENST00000376417 511 ntTSL 5 BASIC20.42■□□□□ 0.86
ABCA1O95477 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ABCA1O95477 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.42■□□□□ 0.86
ABCA1O95477 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ABCA1O95477 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ABCA1O95477 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
ABCA1O95477 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ABCA1O95477 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC20.42■□□□□ 0.86
ABCA1O95477 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
ABCA1O95477 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
ABCA1O95477 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
ABCA1O95477 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
ABCA1O95477 MIR3960-201ENST00000583311 91 ntBASIC20.41■□□□□ 0.86
ABCA1O95477 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
ABCA1O95477 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC20.4■□□□□ 0.86
ABCA1O95477 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ABCA1O95477 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
ABCA1O95477 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.39■□□□□ 0.86
ABCA1O95477 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.86
ABCA1O95477 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
ABCA1O95477 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
ABCA1O95477 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ABCA1O95477 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ABCA1O95477 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
ABCA1O95477 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ABCA1O95477 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
ABCA1O95477 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.39■□□□□ 0.85
ABCA1O95477 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
ABCA1O95477 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
ABCA1O95477 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
ABCA1O95477 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
ABCA1O95477 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
ABCA1O95477 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.38■□□□□ 0.85
ABCA1O95477 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.38■□□□□ 0.85
ABCA1O95477 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
ABCA1O95477 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.37■□□□□ 0.85
ABCA1O95477 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
ABCA1O95477 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
ABCA1O95477 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC20.37■□□□□ 0.85
ABCA1O95477 MTX2-204ENST00000443241 799 ntTSL 3 BASIC20.37■□□□□ 0.85
ABCA1O95477 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC20.37■□□□□ 0.85
ABCA1O95477 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
ABCA1O95477 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC20.37■□□□□ 0.85
ABCA1O95477 AL031848.2-201ENST00000607670 837 ntBASIC20.36■□□□□ 0.85
ABCA1O95477 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ABCA1O95477 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
ABCA1O95477 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
ABCA1O95477 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.35■□□□□ 0.85
ABCA1O95477 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
ABCA1O95477 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
ABCA1O95477 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
ABCA1O95477 Z92544.1-202ENST00000571933 1220 ntBASIC20.34■□□□□ 0.85
ABCA1O95477 AC018755.3-202ENST00000596210 929 ntBASIC20.34■□□□□ 0.85
ABCA1O95477 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
ABCA1O95477 AC239859.2-201ENST00000444165 318 ntBASIC20.34■□□□□ 0.85
ABCA1O95477 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.34■□□□□ 0.85
ABCA1O95477 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
ABCA1O95477 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.34■□□□□ 0.85
ABCA1O95477 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
ABCA1O95477 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
ABCA1O95477 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.34■□□□□ 0.85
ABCA1O95477 MIR935-201ENST00000401179 91 ntBASIC20.33■□□□□ 0.85
ABCA1O95477 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC20.33■□□□□ 0.84
ABCA1O95477 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
ABCA1O95477 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
ABCA1O95477 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
ABCA1O95477 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
ABCA1O95477 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.32■□□□□ 0.84
ABCA1O95477 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.32■□□□□ 0.84
ABCA1O95477 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
ABCA1O95477 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
ABCA1O95477 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
ABCA1O95477 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC20.32■□□□□ 0.84
ABCA1O95477 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.31■□□□□ 0.84
ABCA1O95477 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC20.31■□□□□ 0.84
ABCA1O95477 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ABCA1O95477 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
ABCA1O95477 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.3■□□□□ 0.84
ABCA1O95477 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
ABCA1O95477 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.3■□□□□ 0.84
ABCA1O95477 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
ABCA1O95477 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
ABCA1O95477 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ABCA1O95477 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ABCA1O95477 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
ABCA1O95477 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ABCA1O95477 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ABCA1O95477 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
ABCA1O95477 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
ABCA1O95477 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.29■□□□□ 0.84
ABCA1O95477 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ABCA1O95477 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 9.3 ms