Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC40.76■■■■■ 4.12
CHD1O14646 AC100797.4-201ENST00000631653 1827 ntBASIC40.76■■■■■ 4.12
CHD1O14646 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC40.75■■■■■ 4.11
CHD1O14646 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC40.74■■■■■ 4.11
CHD1O14646 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC40.74■■■■■ 4.11
CHD1O14646 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC40.73■■■■■ 4.11
CHD1O14646 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC40.73■■■■■ 4.11
CHD1O14646 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC40.73■■■■■ 4.11
CHD1O14646 SRR-208ENST00000576848 588 ntTSL 4 BASIC40.73■■■■■ 4.11
CHD1O14646 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC40.73■■■■■ 4.11
CHD1O14646 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC40.72■■■■■ 4.11
CHD1O14646 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC40.72■■■■■ 4.11
CHD1O14646 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC40.72■■■■■ 4.11
CHD1O14646 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC40.72■■■■■ 4.11
CHD1O14646 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC40.71■■■■■ 4.11
CHD1O14646 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC40.7■■■■■ 4.11
CHD1O14646 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC40.7■■■■■ 4.11
CHD1O14646 AC092666.2-201ENST00000613287 246 ntBASIC40.69■■■■■ 4.1
CHD1O14646 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC40.68■■■■■ 4.1
CHD1O14646 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC40.68■■■■■ 4.1
CHD1O14646 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC40.68■■■■■ 4.1
CHD1O14646 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC40.68■■■■■ 4.1
CHD1O14646 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC40.68■■■■■ 4.1
CHD1O14646 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC40.68■■■■■ 4.1
CHD1O14646 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC40.68■■■■■ 4.1
CHD1O14646 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC40.67■■■■■ 4.1
CHD1O14646 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC40.67■■■■■ 4.1
CHD1O14646 RPP21-222ENST00000433076 577 ntTSL 2 BASIC40.67■■■■■ 4.1
CHD1O14646 RPS2P7-201ENST00000447334 885 ntBASIC40.67■■■■■ 4.1
CHD1O14646 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC40.67■■■■■ 4.1
CHD1O14646 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC40.66■■■■■ 4.1
CHD1O14646 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC40.65■■■■■ 4.1
CHD1O14646 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC40.65■■■■■ 4.1
CHD1O14646 AC026271.2-201ENST00000428091 497 ntBASIC40.64■■■■■ 4.1
CHD1O14646 TSPY9P-201ENST00000440215 945 ntBASIC40.64■■■■■ 4.1
CHD1O14646 TSPY11P-201ENST00000442607 1045 ntBASIC40.64■■■■■ 4.1
CHD1O14646 AL117332.1-201ENST00000622628 974 ntBASIC40.64■■■■■ 4.1
CHD1O14646 AL359504.2-201ENST00000605506 1601 ntBASIC40.64■■■■■ 4.1
CHD1O14646 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC40.64■■■■■ 4.1
CHD1O14646 ZNRF2P3-201ENST00000424200 374 ntBASIC40.64■■■■■ 4.1
CHD1O14646 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC40.62■■■■■ 4.09
CHD1O14646 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC40.62■■■■■ 4.09
CHD1O14646 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC40.62■■■■■ 4.09
CHD1O14646 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC40.62■■■■■ 4.09
CHD1O14646 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC40.62■■■■■ 4.09
CHD1O14646 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC40.62■■■■■ 4.09
CHD1O14646 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC40.62■■■■■ 4.09
CHD1O14646 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC40.62■■■■■ 4.09
CHD1O14646 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC40.62■■■■■ 4.09
CHD1O14646 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC40.61■■■■■ 4.09
CHD1O14646 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC40.61■■■■■ 4.09
CHD1O14646 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC40.6■■■■■ 4.09
CHD1O14646 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC40.59■■■■■ 4.09
CHD1O14646 AC096631.2-201ENST00000436136 790 ntBASIC40.59■■■■■ 4.09
CHD1O14646 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC40.59■■■■■ 4.09
CHD1O14646 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC40.59■■■■■ 4.09
CHD1O14646 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC40.59■■■■■ 4.09
CHD1O14646 AC104564.3-201ENST00000582367 638 ntBASIC40.59■■■■■ 4.09
CHD1O14646 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC40.58■■■■■ 4.09
CHD1O14646 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC40.58■■■■■ 4.09
CHD1O14646 AP004833.2-201ENST00000532228 1454 ntBASIC40.58■■■■■ 4.09
CHD1O14646 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC40.57■■■■■ 4.09
CHD1O14646 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC40.57■■■■■ 4.09
CHD1O14646 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC40.57■■■■■ 4.08
CHD1O14646 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC40.56■■■■■ 4.08
CHD1O14646 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC40.56■■■■■ 4.08
CHD1O14646 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC40.56■■■■■ 4.08
CHD1O14646 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC40.55■■■■■ 4.08
CHD1O14646 AC021242.3-201ENST00000607598 1377 ntBASIC40.55■■■■■ 4.08
CHD1O14646 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC40.55■■■■■ 4.08
CHD1O14646 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC40.55■■■■■ 4.08
CHD1O14646 AC137630.3-201ENST00000607245 391 ntBASIC40.55■■■■■ 4.08
CHD1O14646 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC40.55■■■■■ 4.08
CHD1O14646 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC40.54■■■■■ 4.08
CHD1O14646 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC40.53■■■■■ 4.08
CHD1O14646 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC40.53■■■■■ 4.08
CHD1O14646 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC40.53■■■■■ 4.08
CHD1O14646 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC40.53■■■■■ 4.08
CHD1O14646 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC40.53■■■■■ 4.08
CHD1O14646 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC40.53■■■■■ 4.08
CHD1O14646 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC40.53■■■■■ 4.08
CHD1O14646 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC40.53■■■■■ 4.08
CHD1O14646 MIR4466-201ENST00000606121 54 ntBASIC40.53■■■■■ 4.08
CHD1O14646 AC005837.3-201ENST00000612163 286 ntBASIC40.53■■■■■ 4.08
CHD1O14646 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC40.53■■■■■ 4.08
CHD1O14646 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC40.52■■■■■ 4.08
CHD1O14646 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC40.5■■■■■ 4.07
CHD1O14646 AC022616.5-201ENST00000518796 181 ntBASIC40.5■■■■■ 4.07
CHD1O14646 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC40.49■■■■■ 4.07
CHD1O14646 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC40.49■■■■■ 4.07
CHD1O14646 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC40.48■■■■■ 4.07
CHD1O14646 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC40.48■■■■■ 4.07
CHD1O14646 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC40.47■■■■■ 4.07
CHD1O14646 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC40.47■■■■■ 4.07
CHD1O14646 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC40.47■■■■■ 4.07
CHD1O14646 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC40.47■■■■■ 4.07
CHD1O14646 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC40.47■■■■■ 4.07
CHD1O14646 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC40.46■■■■■ 4.07
CHD1O14646 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC40.46■■■■■ 4.07
CHD1O14646 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC40.45■■■■■ 4.07
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms