Protein–RNA interactions for Protein: A7MD48

SRRM4, Serine/arginine repetitive matrix protein 4, humanhuman

Known RBP Predictions only

Length 611 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRRM4A7MD48 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SRRM4A7MD48 AL359504.2-201ENST00000605506 1601 ntBASIC19.64■□□□□ 0.73
SRRM4A7MD48 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SRRM4A7MD48 ERN1-208ENST00000606895 2068 ntBASIC19.64■□□□□ 0.73
SRRM4A7MD48 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SRRM4A7MD48 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
SRRM4A7MD48 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SRRM4A7MD48 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SRRM4A7MD48 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SRRM4A7MD48 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC19.62■□□□□ 0.73
SRRM4A7MD48 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
SRRM4A7MD48 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC19.62■□□□□ 0.73
SRRM4A7MD48 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SRRM4A7MD48 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SRRM4A7MD48 AC020928.2-201ENST00000588717 2197 ntBASIC19.61■□□□□ 0.73
SRRM4A7MD48 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC19.61■□□□□ 0.73
SRRM4A7MD48 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SRRM4A7MD48 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SRRM4A7MD48 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SRRM4A7MD48 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SRRM4A7MD48 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC19.61■□□□□ 0.73
SRRM4A7MD48 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
SRRM4A7MD48 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC19.61■□□□□ 0.73
SRRM4A7MD48 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SRRM4A7MD48 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
SRRM4A7MD48 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC19.61■□□□□ 0.73
SRRM4A7MD48 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SRRM4A7MD48 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SRRM4A7MD48 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC19.6■□□□□ 0.73
SRRM4A7MD48 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SRRM4A7MD48 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
SRRM4A7MD48 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
SRRM4A7MD48 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
SRRM4A7MD48 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SRRM4A7MD48 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC19.59■□□□□ 0.73
SRRM4A7MD48 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SRRM4A7MD48 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
SRRM4A7MD48 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SRRM4A7MD48 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.73
SRRM4A7MD48 PVT1-219ENST00000523427 938 ntTSL 3 BASIC19.58■□□□□ 0.72
SRRM4A7MD48 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC19.58■□□□□ 0.72
SRRM4A7MD48 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SRRM4A7MD48 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SRRM4A7MD48 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SRRM4A7MD48 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
SRRM4A7MD48 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SRRM4A7MD48 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC19.57■□□□□ 0.72
SRRM4A7MD48 AC010501.1-201ENST00000606270 1962 ntBASIC19.57■□□□□ 0.72
SRRM4A7MD48 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SRRM4A7MD48 AC135731.1-201ENST00000569415 2548 ntBASIC19.56■□□□□ 0.72
SRRM4A7MD48 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SRRM4A7MD48 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SRRM4A7MD48 AC126177.7-201ENST00000547904 679 ntBASIC19.55■□□□□ 0.72
SRRM4A7MD48 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC19.55■□□□□ 0.72
SRRM4A7MD48 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SRRM4A7MD48 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SRRM4A7MD48 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SRRM4A7MD48 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SRRM4A7MD48 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SRRM4A7MD48 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SRRM4A7MD48 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SRRM4A7MD48 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC19.54■□□□□ 0.72
SRRM4A7MD48 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC19.54■□□□□ 0.72
SRRM4A7MD48 RPS2-202ENST00000526522 924 ntTSL 2 BASIC19.54■□□□□ 0.72
SRRM4A7MD48 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SRRM4A7MD48 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SRRM4A7MD48 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SRRM4A7MD48 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SRRM4A7MD48 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SRRM4A7MD48 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SRRM4A7MD48 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SRRM4A7MD48 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SRRM4A7MD48 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SRRM4A7MD48 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SRRM4A7MD48 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
SRRM4A7MD48 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SRRM4A7MD48 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC19.52■□□□□ 0.72
SRRM4A7MD48 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
SRRM4A7MD48 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SRRM4A7MD48 MIR639-201ENST00000384974 98 ntBASIC19.52■□□□□ 0.72
SRRM4A7MD48 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC19.52■□□□□ 0.71
SRRM4A7MD48 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SRRM4A7MD48 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
SRRM4A7MD48 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC19.51■□□□□ 0.71
SRRM4A7MD48 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SRRM4A7MD48 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SRRM4A7MD48 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SRRM4A7MD48 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC19.5■□□□□ 0.71
SRRM4A7MD48 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SRRM4A7MD48 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SRRM4A7MD48 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SRRM4A7MD48 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC19.5■□□□□ 0.71
SRRM4A7MD48 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SRRM4A7MD48 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC19.49■□□□□ 0.71
SRRM4A7MD48 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
SRRM4A7MD48 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SRRM4A7MD48 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SRRM4A7MD48 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SRRM4A7MD48 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SRRM4A7MD48 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 10.8 ms