Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV41A0A0B4J266 RP9P-202ENST00000450133 1212 ntBASIC19.19■□□□□ 0.66
TRAV41A0A0B4J266 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV41A0A0B4J266 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV41A0A0B4J266 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC19.18■□□□□ 0.66
TRAV41A0A0B4J266 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC19.18■□□□□ 0.66
TRAV41A0A0B4J266 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
TRAV41A0A0B4J266 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV41A0A0B4J266 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
TRAV41A0A0B4J266 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC19.18■□□□□ 0.66
TRAV41A0A0B4J266 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV41A0A0B4J266 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV41A0A0B4J266 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC19.18■□□□□ 0.66
TRAV41A0A0B4J266 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC19.18■□□□□ 0.66
TRAV41A0A0B4J266 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV41A0A0B4J266 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV41A0A0B4J266 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV41A0A0B4J266 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC19.17■□□□□ 0.66
TRAV41A0A0B4J266 AC093536.1-201ENST00000569153 554 ntBASIC19.17■□□□□ 0.66
TRAV41A0A0B4J266 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
TRAV41A0A0B4J266 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV41A0A0B4J266 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV41A0A0B4J266 GFER-205ENST00000569451 517 ntTSL 5 BASIC19.16■□□□□ 0.66
TRAV41A0A0B4J266 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV41A0A0B4J266 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV41A0A0B4J266 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV41A0A0B4J266 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC19.15■□□□□ 0.66
TRAV41A0A0B4J266 ABHD17AP5-201ENST00000580133 923 ntBASIC19.15■□□□□ 0.66
TRAV41A0A0B4J266 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV41A0A0B4J266 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC19.15■□□□□ 0.66
TRAV41A0A0B4J266 HYI-213ENST00000583037 1322 ntTSL 5 BASIC19.15■□□□□ 0.66
TRAV41A0A0B4J266 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC19.15■□□□□ 0.66
TRAV41A0A0B4J266 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
TRAV41A0A0B4J266 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC19.14■□□□□ 0.66
TRAV41A0A0B4J266 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.66
TRAV41A0A0B4J266 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
TRAV41A0A0B4J266 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV41A0A0B4J266 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
TRAV41A0A0B4J266 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV41A0A0B4J266 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV41A0A0B4J266 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC19.13■□□□□ 0.65
TRAV41A0A0B4J266 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC19.13■□□□□ 0.65
TRAV41A0A0B4J266 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
TRAV41A0A0B4J266 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV41A0A0B4J266 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV41A0A0B4J266 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC19.12■□□□□ 0.65
TRAV41A0A0B4J266 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV41A0A0B4J266 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC19.12■□□□□ 0.65
TRAV41A0A0B4J266 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV41A0A0B4J266 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV41A0A0B4J266 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV41A0A0B4J266 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
TRAV41A0A0B4J266 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV41A0A0B4J266 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV41A0A0B4J266 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
TRAV41A0A0B4J266 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAV41A0A0B4J266 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAV41A0A0B4J266 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
TRAV41A0A0B4J266 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC19.11■□□□□ 0.65
TRAV41A0A0B4J266 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
TRAV41A0A0B4J266 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV41A0A0B4J266 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV41A0A0B4J266 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
TRAV41A0A0B4J266 HES4-204ENST00000484667 667 ntTSL 3 BASIC19.1■□□□□ 0.65
TRAV41A0A0B4J266 AC026202.3-201ENST00000600805 1127 ntBASIC19.1■□□□□ 0.65
TRAV41A0A0B4J266 AC133552.2-201ENST00000619106 1032 ntBASIC19.1■□□□□ 0.65
TRAV41A0A0B4J266 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV41A0A0B4J266 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV41A0A0B4J266 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV41A0A0B4J266 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV41A0A0B4J266 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV41A0A0B4J266 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC19.09■□□□□ 0.65
TRAV41A0A0B4J266 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
TRAV41A0A0B4J266 AC009831.1-201ENST00000580420 1582 ntBASIC19.09■□□□□ 0.65
TRAV41A0A0B4J266 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
TRAV41A0A0B4J266 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV41A0A0B4J266 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRAV41A0A0B4J266 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRAV41A0A0B4J266 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TRAV41A0A0B4J266 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRAV41A0A0B4J266 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC19.08■□□□□ 0.64
TRAV41A0A0B4J266 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRAV41A0A0B4J266 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TRAV41A0A0B4J266 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRAV41A0A0B4J266 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRAV41A0A0B4J266 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV41A0A0B4J266 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV41A0A0B4J266 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC19.07■□□□□ 0.64
TRAV41A0A0B4J266 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC19.07■□□□□ 0.64
TRAV41A0A0B4J266 RAP2CP1-202ENST00000605179 643 ntBASIC19.07■□□□□ 0.64
TRAV41A0A0B4J266 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV41A0A0B4J266 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV41A0A0B4J266 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC19.07■□□□□ 0.64
TRAV41A0A0B4J266 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC19.07■□□□□ 0.64
TRAV41A0A0B4J266 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV41A0A0B4J266 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC19.07■□□□□ 0.64
TRAV41A0A0B4J266 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC19.07■□□□□ 0.64
TRAV41A0A0B4J266 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRAV41A0A0B4J266 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TRAV41A0A0B4J266 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 9.6 ms