Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ERCC4Q92889 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
ERCC4Q92889 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
ERCC4Q92889 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC19.89■□□□□ 0.78
ERCC4Q92889 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
ERCC4Q92889 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ERCC4Q92889 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ERCC4Q92889 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ERCC4Q92889 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ERCC4Q92889 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
ERCC4Q92889 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ERCC4Q92889 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
ERCC4Q92889 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
ERCC4Q92889 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ERCC4Q92889 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ERCC4Q92889 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
ERCC4Q92889 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
ERCC4Q92889 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
ERCC4Q92889 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
ERCC4Q92889 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
ERCC4Q92889 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.89■□□□□ 0.77
ERCC4Q92889 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ERCC4Q92889 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ERCC4Q92889 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
ERCC4Q92889 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC19.89■□□□□ 0.77
ERCC4Q92889 CROCCP1-201ENST00000426910 5675 ntBASIC19.89■□□□□ 0.77
ERCC4Q92889 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
ERCC4Q92889 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
ERCC4Q92889 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC19.89■□□□□ 0.77
ERCC4Q92889 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ERCC4Q92889 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
ERCC4Q92889 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
ERCC4Q92889 AGGF1P2-201ENST00000426656 2106 ntBASIC19.88■□□□□ 0.77
ERCC4Q92889 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
ERCC4Q92889 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
ERCC4Q92889 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ERCC4Q92889 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC19.88■□□□□ 0.77
ERCC4Q92889 KRT89P-201ENST00000620027 1478 ntBASIC19.88■□□□□ 0.77
ERCC4Q92889 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ERCC4Q92889 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ERCC4Q92889 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
ERCC4Q92889 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ERCC4Q92889 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.88■□□□□ 0.77
ERCC4Q92889 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
ERCC4Q92889 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.88■□□□□ 0.77
ERCC4Q92889 DDX43P3-201ENST00000441064 443 ntBASIC19.88■□□□□ 0.77
ERCC4Q92889 KRT18P38-201ENST00000449496 1282 ntBASIC19.88■□□□□ 0.77
ERCC4Q92889 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.88■□□□□ 0.77
ERCC4Q92889 COX11P1-201ENST00000489116 835 ntBASIC19.88■□□□□ 0.77
ERCC4Q92889 AC112698.1-201ENST00000510299 916 ntBASIC19.88■□□□□ 0.77
ERCC4Q92889 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.88■□□□□ 0.77
ERCC4Q92889 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.88■□□□□ 0.77
ERCC4Q92889 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC19.88■□□□□ 0.77
ERCC4Q92889 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
ERCC4Q92889 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ERCC4Q92889 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
ERCC4Q92889 OR6D1P-203ENST00000641209 4860 ntBASIC19.88■□□□□ 0.77
ERCC4Q92889 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
ERCC4Q92889 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC19.88■□□□□ 0.77
ERCC4Q92889 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
ERCC4Q92889 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
ERCC4Q92889 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC19.88■□□□□ 0.77
ERCC4Q92889 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
ERCC4Q92889 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
ERCC4Q92889 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ERCC4Q92889 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ERCC4Q92889 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ERCC4Q92889 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
ERCC4Q92889 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
ERCC4Q92889 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC19.87■□□□□ 0.77
ERCC4Q92889 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
ERCC4Q92889 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
ERCC4Q92889 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
ERCC4Q92889 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ERCC4Q92889 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ERCC4Q92889 KRT18P48-201ENST00000434763 852 ntBASIC19.87■□□□□ 0.77
ERCC4Q92889 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.87■□□□□ 0.77
ERCC4Q92889 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.87■□□□□ 0.77
ERCC4Q92889 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC19.87■□□□□ 0.77
ERCC4Q92889 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.87■□□□□ 0.77
ERCC4Q92889 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC19.87■□□□□ 0.77
ERCC4Q92889 AC073912.3-201ENST00000624414 853 ntBASIC19.87■□□□□ 0.77
ERCC4Q92889 AC133561.5-201ENST00000635547 218 ntBASIC19.87■□□□□ 0.77
ERCC4Q92889 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ERCC4Q92889 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
ERCC4Q92889 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC19.87■□□□□ 0.77
ERCC4Q92889 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
ERCC4Q92889 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC19.87■□□□□ 0.77
ERCC4Q92889 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
ERCC4Q92889 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
ERCC4Q92889 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
ERCC4Q92889 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
ERCC4Q92889 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
ERCC4Q92889 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
ERCC4Q92889 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
ERCC4Q92889 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC19.86■□□□□ 0.77
ERCC4Q92889 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
ERCC4Q92889 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
ERCC4Q92889 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
ERCC4Q92889 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms