Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 NCF1C-201ENST00000438382 1427 ntBASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 MYCLP1-201ENST00000372451 1075 ntBASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 POM121L3P-201ENST00000419331 1163 ntBASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 PMS2P1-201ENST00000431037 1228 ntBASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 AC132938.5-201ENST00000624980 1813 ntBASIC17.82■□□□□ 0.44
SHROOM3Q8TF72 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 TSPY19P-201ENST00000418461 509 ntBASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 TSPY18P-201ENST00000441642 509 ntBASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 KRT16P4-201ENST00000453883 522 ntBASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 AC106795.1-205ENST00000512851 1056 ntBASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 TBCB-205ENST00000585746 875 ntTSL 3 BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 AC004817.3-201ENST00000602957 2129 ntBASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 AC116353.5-201ENST00000638148 1699 ntBASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.81■□□□□ 0.44
SHROOM3Q8TF72 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 AC002558.1-201ENST00000488906 803 ntBASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
SHROOM3Q8TF72 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms