Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 DUX4L27-201ENST00000554796 1261 ntBASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 AC015911.4-201ENST00000588022 1070 ntBASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SLC44A3Q8N4M1 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SLC44A3Q8N4M1 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SLC44A3Q8N4M1 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
SLC44A3Q8N4M1 AP000974.1-201ENST00000623909 2387 ntBASIC17.83■□□□□ 0.45
SLC44A3Q8N4M1 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.45
SLC44A3Q8N4M1 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SLC44A3Q8N4M1 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
SLC44A3Q8N4M1 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SLC44A3Q8N4M1 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
SLC44A3Q8N4M1 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SLC44A3Q8N4M1 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SLC44A3Q8N4M1 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.83■□□□□ 0.44
SLC44A3Q8N4M1 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SLC44A3Q8N4M1 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC17.83■□□□□ 0.44
SLC44A3Q8N4M1 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.83■□□□□ 0.44
SLC44A3Q8N4M1 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.44
SLC44A3Q8N4M1 ADH5P3-201ENST00000433842 1137 ntBASIC17.83■□□□□ 0.44
SLC44A3Q8N4M1 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SLC44A3Q8N4M1 TIMM8BP1-201ENST00000452384 211 ntBASIC17.83■□□□□ 0.44
SLC44A3Q8N4M1 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC17.83■□□□□ 0.44
SLC44A3Q8N4M1 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC17.83■□□□□ 0.44
SLC44A3Q8N4M1 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.83■□□□□ 0.44
SLC44A3Q8N4M1 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
SLC44A3Q8N4M1 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.83■□□□□ 0.44
SLC44A3Q8N4M1 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.83■□□□□ 0.44
SLC44A3Q8N4M1 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.83■□□□□ 0.44
SLC44A3Q8N4M1 AJ011932.1-201ENST00000621707 465 ntBASIC17.83■□□□□ 0.44
SLC44A3Q8N4M1 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SLC44A3Q8N4M1 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SLC44A3Q8N4M1 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
SLC44A3Q8N4M1 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SLC44A3Q8N4M1 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SLC44A3Q8N4M1 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 AL627223.1-201ENST00000416693 442 ntBASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 ACTG1P4-201ENST00000425123 1122 ntBASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 AC002558.1-201ENST00000488906 803 ntBASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 AC067863.1-201ENST00000494933 530 ntBASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 AQP6-203ENST00000551733 849 ntTSL 3 BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 AC026120.1-201ENST00000611536 926 ntBASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 ACTL9-202ENST00000612068 1252 ntBASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 AC009093.7-201ENST00000623853 1223 ntBASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 Z92544.3-201ENST00000624747 417 ntBASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SLC44A3Q8N4M1 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.81■□□□□ 0.44
SLC44A3Q8N4M1 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms