Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 SNHG9-202ENST00000564014 471 ntBASIC21.47■■□□□ 1.03
USP48Q86UV5 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC21.47■■□□□ 1.03
USP48Q86UV5 AC005829.1-201ENST00000570002 483 ntBASIC21.47■■□□□ 1.03
USP48Q86UV5 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC21.47■■□□□ 1.03
USP48Q86UV5 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC21.47■■□□□ 1.03
USP48Q86UV5 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC21.47■■□□□ 1.03
USP48Q86UV5 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC21.47■■□□□ 1.03
USP48Q86UV5 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
USP48Q86UV5 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
USP48Q86UV5 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
USP48Q86UV5 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
USP48Q86UV5 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
USP48Q86UV5 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
USP48Q86UV5 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
USP48Q86UV5 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
USP48Q86UV5 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
USP48Q86UV5 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
USP48Q86UV5 AC138028.4-201ENST00000564984 1845 ntBASIC21.46■■□□□ 1.03
USP48Q86UV5 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
USP48Q86UV5 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC21.46■■□□□ 1.03
USP48Q86UV5 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
USP48Q86UV5 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
USP48Q86UV5 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
USP48Q86UV5 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
USP48Q86UV5 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
USP48Q86UV5 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
USP48Q86UV5 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
USP48Q86UV5 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
USP48Q86UV5 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
USP48Q86UV5 LAGE3P1-201ENST00000425356 484 ntBASIC21.46■■□□□ 1.03
USP48Q86UV5 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC21.46■■□□□ 1.03
USP48Q86UV5 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC21.46■■□□□ 1.03
USP48Q86UV5 COPE-211ENST00000600932 1144 ntTSL 5 BASIC21.46■■□□□ 1.03
USP48Q86UV5 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
USP48Q86UV5 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
USP48Q86UV5 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
USP48Q86UV5 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
USP48Q86UV5 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
USP48Q86UV5 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
USP48Q86UV5 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
USP48Q86UV5 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
USP48Q86UV5 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
USP48Q86UV5 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
USP48Q86UV5 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
USP48Q86UV5 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
USP48Q86UV5 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC21.45■■□□□ 1.02
USP48Q86UV5 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
USP48Q86UV5 LINC00602-201ENST00000629776 2065 ntBASIC21.45■■□□□ 1.02
USP48Q86UV5 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
USP48Q86UV5 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
USP48Q86UV5 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
USP48Q86UV5 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
USP48Q86UV5 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
USP48Q86UV5 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
USP48Q86UV5 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
USP48Q86UV5 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC21.45■■□□□ 1.02
USP48Q86UV5 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC21.45■■□□□ 1.02
USP48Q86UV5 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
USP48Q86UV5 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
USP48Q86UV5 AC139713.2-201ENST00000641328 2723 ntBASIC21.45■■□□□ 1.02
USP48Q86UV5 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC21.45■■□□□ 1.02
USP48Q86UV5 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
USP48Q86UV5 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
USP48Q86UV5 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
USP48Q86UV5 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
USP48Q86UV5 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
USP48Q86UV5 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC21.44■■□□□ 1.02
USP48Q86UV5 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
USP48Q86UV5 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
USP48Q86UV5 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC21.44■■□□□ 1.02
USP48Q86UV5 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
USP48Q86UV5 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
USP48Q86UV5 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
USP48Q86UV5 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
USP48Q86UV5 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
USP48Q86UV5 GNAS-203ENST00000306120 1878 ntBASIC21.44■■□□□ 1.02
USP48Q86UV5 POR-209ENST00000439269 1858 ntTSL 2 BASIC21.44■■□□□ 1.02
USP48Q86UV5 AL024508.2-201ENST00000607749 1894 ntBASIC21.44■■□□□ 1.02
USP48Q86UV5 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
USP48Q86UV5 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
USP48Q86UV5 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
USP48Q86UV5 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC21.44■■□□□ 1.02
USP48Q86UV5 MCCD1P2-201ENST00000423228 335 ntBASIC21.44■■□□□ 1.02
USP48Q86UV5 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC21.44■■□□□ 1.02
USP48Q86UV5 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC21.44■■□□□ 1.02
USP48Q86UV5 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC21.44■■□□□ 1.02
USP48Q86UV5 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC21.44■■□□□ 1.02
USP48Q86UV5 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC21.44■■□□□ 1.02
USP48Q86UV5 CYGB-205ENST00000590175 830 ntTSL 3 BASIC21.44■■□□□ 1.02
USP48Q86UV5 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC21.44■■□□□ 1.02
USP48Q86UV5 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC21.44■■□□□ 1.02
USP48Q86UV5 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC21.44■■□□□ 1.02
USP48Q86UV5 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
USP48Q86UV5 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC21.44■■□□□ 1.02
USP48Q86UV5 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
USP48Q86UV5 REXO1L9P-201ENST00000604264 2108 ntBASIC21.44■■□□□ 1.02
USP48Q86UV5 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC21.44■■□□□ 1.02
USP48Q86UV5 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
USP48Q86UV5 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
USP48Q86UV5 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms