Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 AC099343.3-201ENST00000605834 2503 ntBASIC16.84■□□□□ 0.29
COL28A1Q2UY09 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL28A1Q2UY09 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC16.83■□□□□ 0.29
COL28A1Q2UY09 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
COL28A1Q2UY09 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL28A1Q2UY09 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC16.83■□□□□ 0.28
COL28A1Q2UY09 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL28A1Q2UY09 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL28A1Q2UY09 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL28A1Q2UY09 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL28A1Q2UY09 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL28A1Q2UY09 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
COL28A1Q2UY09 NOC2LP2-201ENST00000407594 1944 ntBASIC16.83■□□□□ 0.28
COL28A1Q2UY09 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.83■□□□□ 0.28
COL28A1Q2UY09 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL28A1Q2UY09 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.83■□□□□ 0.28
COL28A1Q2UY09 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC16.83■□□□□ 0.28
COL28A1Q2UY09 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL28A1Q2UY09 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL28A1Q2UY09 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.83■□□□□ 0.28
COL28A1Q2UY09 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL28A1Q2UY09 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.83■□□□□ 0.28
COL28A1Q2UY09 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL28A1Q2UY09 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.83■□□□□ 0.28
COL28A1Q2UY09 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL28A1Q2UY09 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.83■□□□□ 0.28
COL28A1Q2UY09 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
COL28A1Q2UY09 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL28A1Q2UY09 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.83■□□□□ 0.28
COL28A1Q2UY09 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 AL139400.1-201ENST00000366220 510 ntBASIC16.82■□□□□ 0.28
COL28A1Q2UY09 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 DUX4L17-201ENST00000557360 1267 ntBASIC16.82■□□□□ 0.28
COL28A1Q2UY09 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 AC104581.1-202ENST00000635932 2618 ntBASIC16.82■□□□□ 0.28
COL28A1Q2UY09 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.82■□□□□ 0.28
COL28A1Q2UY09 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 GSAP-205ENST00000430584 600 ntTSL 5 BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 AL138831.2-201ENST00000606564 490 ntBASIC16.81■□□□□ 0.28
COL28A1Q2UY09 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 AC012645.4-201ENST00000610691 1061 ntBASIC16.81■□□□□ 0.28
COL28A1Q2UY09 PGM5P2-202ENST00000637225 1043 ntBASIC16.81■□□□□ 0.28
COL28A1Q2UY09 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.81■□□□□ 0.28
COL28A1Q2UY09 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms