Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC18.54■□□□□ 0.56
LHX1P48742 CYGB-205ENST00000590175 830 ntTSL 3 BASIC18.54■□□□□ 0.56
LHX1P48742 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
LHX1P48742 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC18.54■□□□□ 0.56
LHX1P48742 PGM5P2-202ENST00000637225 1043 ntBASIC18.54■□□□□ 0.56
LHX1P48742 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.54■□□□□ 0.56
LHX1P48742 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
LHX1P48742 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LHX1P48742 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.54■□□□□ 0.56
LHX1P48742 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LHX1P48742 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LHX1P48742 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LHX1P48742 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LHX1P48742 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LHX1P48742 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LHX1P48742 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LHX1P48742 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
LHX1P48742 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.53■□□□□ 0.56
LHX1P48742 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
LHX1P48742 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LHX1P48742 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.53■□□□□ 0.56
LHX1P48742 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.53■□□□□ 0.56
LHX1P48742 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LHX1P48742 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
LHX1P48742 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
LHX1P48742 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LHX1P48742 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC18.53■□□□□ 0.56
LHX1P48742 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.53■□□□□ 0.56
LHX1P48742 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.53■□□□□ 0.56
LHX1P48742 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LHX1P48742 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.53■□□□□ 0.56
LHX1P48742 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC18.53■□□□□ 0.56
LHX1P48742 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.53■□□□□ 0.56
LHX1P48742 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.53■□□□□ 0.56
LHX1P48742 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LHX1P48742 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.53■□□□□ 0.56
LHX1P48742 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.53■□□□□ 0.56
LHX1P48742 MIR1199-201ENST00000621445 119 ntBASIC18.53■□□□□ 0.56
LHX1P48742 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LHX1P48742 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
LHX1P48742 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LHX1P48742 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.53■□□□□ 0.56
LHX1P48742 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.53■□□□□ 0.56
LHX1P48742 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LHX1P48742 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LHX1P48742 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.53■□□□□ 0.56
LHX1P48742 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
LHX1P48742 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
LHX1P48742 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.52■□□□□ 0.56
LHX1P48742 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.52■□□□□ 0.56
LHX1P48742 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
LHX1P48742 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LHX1P48742 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.52■□□□□ 0.56
LHX1P48742 ACTG1P4-201ENST00000425123 1122 ntBASIC18.52■□□□□ 0.56
LHX1P48742 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.52■□□□□ 0.56
LHX1P48742 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LHX1P48742 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.52■□□□□ 0.56
LHX1P48742 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LHX1P48742 IGHV3-22-201ENST00000520721 359 ntBASIC18.52■□□□□ 0.56
LHX1P48742 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.52■□□□□ 0.56
LHX1P48742 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.52■□□□□ 0.56
LHX1P48742 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18.52■□□□□ 0.56
LHX1P48742 AL356488.2-201ENST00000602755 427 ntBASIC18.52■□□□□ 0.56
LHX1P48742 AL139424.1-201ENST00000607572 797 ntBASIC18.52■□□□□ 0.56
LHX1P48742 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LHX1P48742 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
LHX1P48742 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.52■□□□□ 0.56
LHX1P48742 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
LHX1P48742 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
LHX1P48742 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LHX1P48742 AP002414.3-201ENST00000589352 1468 ntBASIC18.52■□□□□ 0.55
LHX1P48742 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.52■□□□□ 0.55
LHX1P48742 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.52■□□□□ 0.55
LHX1P48742 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LHX1P48742 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LHX1P48742 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LHX1P48742 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
LHX1P48742 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
LHX1P48742 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
LHX1P48742 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LHX1P48742 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LHX1P48742 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LHX1P48742 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC18.51■□□□□ 0.55
LHX1P48742 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LHX1P48742 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LHX1P48742 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LHX1P48742 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LHX1P48742 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LHX1P48742 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.51■□□□□ 0.55
LHX1P48742 LYSMD4-203ENST00000378904 2122 ntBASIC18.51■□□□□ 0.55
LHX1P48742 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.51■□□□□ 0.55
LHX1P48742 AC073621.1-201ENST00000392730 636 ntBASIC18.51■□□□□ 0.55
LHX1P48742 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.51■□□□□ 0.55
LHX1P48742 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC18.51■□□□□ 0.55
LHX1P48742 AC098831.1-202ENST00000438821 336 ntBASIC18.51■□□□□ 0.55
LHX1P48742 RPL13AP23-201ENST00000480739 586 ntBASIC18.51■□□□□ 0.55
LHX1P48742 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC18.51■□□□□ 0.55
LHX1P48742 AC136632.2-201ENST00000512891 861 ntBASIC18.51■□□□□ 0.55
LHX1P48742 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LHX1P48742 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms