Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CDX1P47902 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CDX1P47902 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CDX1P47902 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CDX1P47902 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC14.37□□□□□ -0.11
CDX1P47902 AGK-211ENST00000629555 2765 ntTSL 5 BASIC14.37□□□□□ -0.11
CDX1P47902 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
CDX1P47902 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CDX1P47902 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CDX1P47902 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CDX1P47902 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CDX1P47902 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC14.37□□□□□ -0.11
CDX1P47902 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC14.37□□□□□ -0.11
CDX1P47902 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
CDX1P47902 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC14.36□□□□□ -0.11
CDX1P47902 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC14.36□□□□□ -0.11
CDX1P47902 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC14.36□□□□□ -0.11
CDX1P47902 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
CDX1P47902 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC14.36□□□□□ -0.11
CDX1P47902 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 AP000593.1-201ENST00000393668 712 ntBASIC14.36□□□□□ -0.11
CDX1P47902 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 KRT18P41-201ENST00000518924 1277 ntBASIC14.36□□□□□ -0.11
CDX1P47902 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
CDX1P47902 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC14.36□□□□□ -0.11
CDX1P47902 AL157888.1-201ENST00000631930 593 ntBASIC14.36□□□□□ -0.11
CDX1P47902 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC14.36□□□□□ -0.11
CDX1P47902 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC14.36□□□□□ -0.11
CDX1P47902 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC14.36□□□□□ -0.11
CDX1P47902 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
CDX1P47902 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC14.36□□□□□ -0.11
CDX1P47902 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC14.36□□□□□ -0.11
CDX1P47902 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC14.36□□□□□ -0.11
CDX1P47902 NFYC-AS1-201ENST00000606277 1687 ntBASIC14.36□□□□□ -0.11
CDX1P47902 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CDX1P47902 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC14.36□□□□□ -0.11
CDX1P47902 BANP-201ENST00000286122 2368 ntTSL 5 BASIC14.36□□□□□ -0.11
CDX1P47902 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDX1P47902 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDX1P47902 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDX1P47902 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC14.35□□□□□ -0.11
CDX1P47902 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC14.35□□□□□ -0.11
CDX1P47902 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC14.35□□□□□ -0.11
CDX1P47902 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CDX1P47902 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDX1P47902 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
CDX1P47902 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.35□□□□□ -0.11
CDX1P47902 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CDX1P47902 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC14.35□□□□□ -0.11
CDX1P47902 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDX1P47902 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDX1P47902 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
CDX1P47902 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC14.35□□□□□ -0.11
CDX1P47902 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDX1P47902 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
CDX1P47902 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC14.35□□□□□ -0.11
CDX1P47902 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDX1P47902 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC14.35□□□□□ -0.11
CDX1P47902 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CDX1P47902 COPS8-203ENST00000409334 794 ntTSL 5 BASIC14.35□□□□□ -0.11
CDX1P47902 UPK3BP1-201ENST00000428678 509 ntBASIC14.35□□□□□ -0.11
CDX1P47902 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CDX1P47902 AC092597.1-201ENST00000487352 616 ntBASIC14.35□□□□□ -0.11
CDX1P47902 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
CDX1P47902 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC14.35□□□□□ -0.11
CDX1P47902 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
CDX1P47902 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC14.35□□□□□ -0.11
CDX1P47902 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDX1P47902 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDX1P47902 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDX1P47902 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CDX1P47902 HYMAI-201ENST00000635591 3347 ntBASIC14.35□□□□□ -0.11
CDX1P47902 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
CDX1P47902 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDX1P47902 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
CDX1P47902 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CDX1P47902 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms