Protein–RNA interactions for Protein: P46736

BRCC3, Lys-63-specific deubiquitinase BRCC36, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3P46736 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
BRCC3P46736 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
BRCC3P46736 KRT18P2-201ENST00000447938 1258 ntBASIC18.61■□□□□ 0.57
BRCC3P46736 RNA5SP416-201ENST00000516838 111 ntBASIC18.61■□□□□ 0.57
BRCC3P46736 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.61■□□□□ 0.57
BRCC3P46736 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC18.61■□□□□ 0.57
BRCC3P46736 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.61■□□□□ 0.57
BRCC3P46736 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.61■□□□□ 0.57
BRCC3P46736 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.61■□□□□ 0.57
BRCC3P46736 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.61■□□□□ 0.57
BRCC3P46736 AL353135.1-201ENST00000606729 504 ntBASIC18.61■□□□□ 0.57
BRCC3P46736 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
BRCC3P46736 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
BRCC3P46736 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
BRCC3P46736 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
BRCC3P46736 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.61■□□□□ 0.57
BRCC3P46736 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.61■□□□□ 0.57
BRCC3P46736 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.61■□□□□ 0.57
BRCC3P46736 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
BRCC3P46736 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
BRCC3P46736 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
BRCC3P46736 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.6■□□□□ 0.57
BRCC3P46736 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
BRCC3P46736 PTCHD3P3-201ENST00000403073 906 ntBASIC18.6■□□□□ 0.57
BRCC3P46736 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.6■□□□□ 0.57
BRCC3P46736 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.6■□□□□ 0.57
BRCC3P46736 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
BRCC3P46736 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
BRCC3P46736 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.6■□□□□ 0.57
BRCC3P46736 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.6■□□□□ 0.57
BRCC3P46736 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
BRCC3P46736 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
BRCC3P46736 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.6■□□□□ 0.57
BRCC3P46736 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
BRCC3P46736 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
BRCC3P46736 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
BRCC3P46736 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.59■□□□□ 0.57
BRCC3P46736 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.59■□□□□ 0.57
BRCC3P46736 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRCC3P46736 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRCC3P46736 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.59■□□□□ 0.57
BRCC3P46736 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
BRCC3P46736 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
BRCC3P46736 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRCC3P46736 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC18.59■□□□□ 0.57
BRCC3P46736 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRCC3P46736 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRCC3P46736 BEX3-201ENST00000361298 921 ntTSL 2 BASIC18.59■□□□□ 0.57
BRCC3P46736 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.59■□□□□ 0.57
BRCC3P46736 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.59■□□□□ 0.57
BRCC3P46736 AC023274.1-201ENST00000418278 595 ntBASIC18.59■□□□□ 0.57
BRCC3P46736 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.59■□□□□ 0.57
BRCC3P46736 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC18.59■□□□□ 0.57
BRCC3P46736 IGHV3-65-201ENST00000523210 341 ntBASIC18.59■□□□□ 0.57
BRCC3P46736 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.59■□□□□ 0.57
BRCC3P46736 MIR4751-201ENST00000578027 74 ntBASIC18.59■□□□□ 0.57
BRCC3P46736 AC008667.4-201ENST00000607370 168 ntBASIC18.59■□□□□ 0.57
BRCC3P46736 AC004790.2-201ENST00000623588 572 ntBASIC18.59■□□□□ 0.57
BRCC3P46736 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.59■□□□□ 0.57
BRCC3P46736 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRCC3P46736 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRCC3P46736 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.59■□□□□ 0.57
BRCC3P46736 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRCC3P46736 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRCC3P46736 AC006116.8-202ENST00000587620 1550 ntBASIC18.59■□□□□ 0.57
BRCC3P46736 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRCC3P46736 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRCC3P46736 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
BRCC3P46736 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
BRCC3P46736 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
BRCC3P46736 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
BRCC3P46736 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.58■□□□□ 0.57
BRCC3P46736 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
BRCC3P46736 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.58■□□□□ 0.57
BRCC3P46736 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.58■□□□□ 0.57
BRCC3P46736 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.58■□□□□ 0.57
BRCC3P46736 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.58■□□□□ 0.57
BRCC3P46736 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
BRCC3P46736 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
BRCC3P46736 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.58■□□□□ 0.56
BRCC3P46736 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
BRCC3P46736 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
BRCC3P46736 MIR1233-2-201ENST00000408138 82 ntBASIC18.58■□□□□ 0.56
BRCC3P46736 MIR1233-1-201ENST00000408722 82 ntBASIC18.58■□□□□ 0.56
BRCC3P46736 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.58■□□□□ 0.56
BRCC3P46736 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.58■□□□□ 0.56
BRCC3P46736 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC18.58■□□□□ 0.56
BRCC3P46736 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.58■□□□□ 0.56
BRCC3P46736 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
BRCC3P46736 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
BRCC3P46736 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
BRCC3P46736 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18.58■□□□□ 0.56
BRCC3P46736 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.58■□□□□ 0.56
BRCC3P46736 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.58■□□□□ 0.56
BRCC3P46736 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
BRCC3P46736 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
BRCC3P46736 AC046185.3-201ENST00000623228 1824 ntBASIC18.58■□□□□ 0.56
BRCC3P46736 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.58■□□□□ 0.56
BRCC3P46736 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.58■□□□□ 0.56
BRCC3P46736 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms