Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC22.86■■□□□ 1.25
COL18A1P39060 AC012645.4-201ENST00000610691 1061 ntBASIC22.86■■□□□ 1.25
COL18A1P39060 AL139327.4-201ENST00000612362 153 ntBASIC22.86■■□□□ 1.25
COL18A1P39060 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
COL18A1P39060 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC22.86■■□□□ 1.25
COL18A1P39060 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC22.86■■□□□ 1.25
COL18A1P39060 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC22.86■■□□□ 1.25
COL18A1P39060 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
COL18A1P39060 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
COL18A1P39060 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC22.86■■□□□ 1.25
COL18A1P39060 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC22.86■■□□□ 1.25
COL18A1P39060 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC22.86■■□□□ 1.25
COL18A1P39060 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
COL18A1P39060 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC22.86■■□□□ 1.25
COL18A1P39060 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC22.86■■□□□ 1.25
COL18A1P39060 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC22.86■■□□□ 1.25
COL18A1P39060 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
COL18A1P39060 MRPS18AP1-201ENST00000414458 589 ntBASIC22.86■■□□□ 1.25
COL18A1P39060 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC22.86■■□□□ 1.25
COL18A1P39060 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC22.86■■□□□ 1.25
COL18A1P39060 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC22.86■■□□□ 1.25
COL18A1P39060 BAD-207ENST00000544785 525 ntTSL 3 BASIC22.86■■□□□ 1.25
COL18A1P39060 AC005225.4-201ENST00000557330 545 ntBASIC22.86■■□□□ 1.25
COL18A1P39060 LINC01225-203ENST00000563550 1244 ntBASIC22.86■■□□□ 1.25
COL18A1P39060 SSH2-211ENST00000590153 570 ntTSL 4 BASIC22.86■■□□□ 1.25
COL18A1P39060 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
COL18A1P39060 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC22.86■■□□□ 1.25
COL18A1P39060 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
COL18A1P39060 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC22.86■■□□□ 1.25
COL18A1P39060 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC22.86■■□□□ 1.25
COL18A1P39060 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC22.86■■□□□ 1.25
COL18A1P39060 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL18A1P39060 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL18A1P39060 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL18A1P39060 FO538757.1-201ENST00000623083 1397 ntBASIC22.85■■□□□ 1.25
COL18A1P39060 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL18A1P39060 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC22.85■■□□□ 1.25
COL18A1P39060 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL18A1P39060 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL18A1P39060 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC22.85■■□□□ 1.25
COL18A1P39060 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC22.85■■□□□ 1.25
COL18A1P39060 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC22.85■■□□□ 1.25
COL18A1P39060 SLC25A39P2-201ENST00000537614 270 ntBASIC22.85■■□□□ 1.25
COL18A1P39060 AC008761.3-201ENST00000624803 892 ntBASIC22.85■■□□□ 1.25
COL18A1P39060 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC22.85■■□□□ 1.25
COL18A1P39060 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL18A1P39060 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL18A1P39060 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC22.85■■□□□ 1.25
COL18A1P39060 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
COL18A1P39060 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
COL18A1P39060 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
COL18A1P39060 AC008677.1-201ENST00000519230 1561 ntBASIC22.85■■□□□ 1.25
COL18A1P39060 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC22.84■■□□□ 1.25
COL18A1P39060 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC22.84■■□□□ 1.25
COL18A1P39060 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
COL18A1P39060 VMA21-202ENST00000370361 693 ntTSL 5 BASIC22.84■■□□□ 1.25
COL18A1P39060 METTL26-204ENST00000397665 558 ntTSL 2 BASIC22.84■■□□□ 1.25
COL18A1P39060 TSPY16P-201ENST00000449843 468 ntBASIC22.84■■□□□ 1.25
COL18A1P39060 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
COL18A1P39060 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC22.84■■□□□ 1.25
COL18A1P39060 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC22.84■■□□□ 1.25
COL18A1P39060 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
COL18A1P39060 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
COL18A1P39060 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
COL18A1P39060 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
COL18A1P39060 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
COL18A1P39060 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC22.84■■□□□ 1.25
COL18A1P39060 AC125807.1-201ENST00000483097 614 ntBASIC22.84■■□□□ 1.25
COL18A1P39060 RNA5SP421-201ENST00000516864 134 ntBASIC22.84■■□□□ 1.25
COL18A1P39060 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC22.84■■□□□ 1.25
COL18A1P39060 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC22.84■■□□□ 1.25
COL18A1P39060 AC026150.2-201ENST00000564693 1156 ntBASIC22.84■■□□□ 1.25
COL18A1P39060 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC22.84■■□□□ 1.25
COL18A1P39060 AL158211.3-201ENST00000607385 239 ntBASIC22.84■■□□□ 1.25
COL18A1P39060 AL390754.1-201ENST00000619088 582 ntBASIC22.84■■□□□ 1.25
COL18A1P39060 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
COL18A1P39060 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
COL18A1P39060 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
COL18A1P39060 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC22.83■■□□□ 1.25
COL18A1P39060 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC22.83■■□□□ 1.25
COL18A1P39060 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
COL18A1P39060 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC22.83■■□□□ 1.25
COL18A1P39060 GNAS-203ENST00000306120 1878 ntBASIC22.83■■□□□ 1.25
COL18A1P39060 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC22.83■■□□□ 1.25
COL18A1P39060 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
COL18A1P39060 RBPMS2P1-201ENST00000437762 623 ntBASIC22.83■■□□□ 1.24
COL18A1P39060 GATD1-206ENST00000526325 756 ntTSL 5 BASIC22.83■■□□□ 1.24
COL18A1P39060 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC22.83■■□□□ 1.24
COL18A1P39060 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC22.83■■□□□ 1.24
COL18A1P39060 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC22.83■■□□□ 1.24
COL18A1P39060 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC22.83■■□□□ 1.24
COL18A1P39060 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC22.83■■□□□ 1.24
COL18A1P39060 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
COL18A1P39060 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
COL18A1P39060 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
COL18A1P39060 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC22.82■■□□□ 1.24
COL18A1P39060 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC22.82■■□□□ 1.24
COL18A1P39060 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC22.82■■□□□ 1.24
COL18A1P39060 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC22.82■■□□□ 1.24
COL18A1P39060 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC22.82■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms