Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 HLA-A-201ENST00000376802 1334 ntBASIC17.65■□□□□ 0.42
LHX3Q9UBR4 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 AL138688.1-201ENST00000624851 1594 ntBASIC17.65■□□□□ 0.42
LHX3Q9UBR4 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
LHX3Q9UBR4 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
LHX3Q9UBR4 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
LHX3Q9UBR4 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 AL031284.1-201ENST00000419297 478 ntBASIC17.64■□□□□ 0.41
LHX3Q9UBR4 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 OR7E14P-202ENST00000530490 1290 ntBASIC17.64■□□□□ 0.41
LHX3Q9UBR4 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.64■□□□□ 0.41
LHX3Q9UBR4 AC064862.7-201ENST00000604520 867 ntBASIC17.64■□□□□ 0.41
LHX3Q9UBR4 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 FAM215A-202ENST00000632077 792 ntBASIC17.64■□□□□ 0.41
LHX3Q9UBR4 AC107918.4-202ENST00000641623 219 ntBASIC17.64■□□□□ 0.41
LHX3Q9UBR4 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 AL135999.2-201ENST00000622438 1686 ntBASIC17.64■□□□□ 0.41
LHX3Q9UBR4 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
LHX3Q9UBR4 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LHX3Q9UBR4 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LHX3Q9UBR4 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LHX3Q9UBR4 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LHX3Q9UBR4 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LHX3Q9UBR4 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.62■□□□□ 0.41
LHX3Q9UBR4 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LHX3Q9UBR4 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LHX3Q9UBR4 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LHX3Q9UBR4 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LHX3Q9UBR4 LAGE3P1-201ENST00000425356 484 ntBASIC17.62■□□□□ 0.41
LHX3Q9UBR4 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC17.62■□□□□ 0.41
LHX3Q9UBR4 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.62■□□□□ 0.41
LHX3Q9UBR4 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.62■□□□□ 0.41
LHX3Q9UBR4 AC012640.2-201ENST00000561606 901 ntBASIC17.62■□□□□ 0.41
LHX3Q9UBR4 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.62■□□□□ 0.41
LHX3Q9UBR4 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.62■□□□□ 0.41
LHX3Q9UBR4 AP001005.1-201ENST00000571755 1248 ntBASIC17.62■□□□□ 0.41
LHX3Q9UBR4 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.62■□□□□ 0.41
LHX3Q9UBR4 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC17.62■□□□□ 0.41
LHX3Q9UBR4 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.62■□□□□ 0.41
LHX3Q9UBR4 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.62■□□□□ 0.41
LHX3Q9UBR4 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
LHX3Q9UBR4 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.62■□□□□ 0.41
LHX3Q9UBR4 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms