Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.19■□□□□ 0.02
COL12A1Q99715 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC15.19■□□□□ 0.02
COL12A1Q99715 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
COL12A1Q99715 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
COL12A1Q99715 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL12A1Q99715 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL12A1Q99715 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC15.19■□□□□ 0.02
COL12A1Q99715 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
COL12A1Q99715 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL12A1Q99715 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.19■□□□□ 0.02
COL12A1Q99715 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC15.19■□□□□ 0.02
COL12A1Q99715 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.19■□□□□ 0.02
COL12A1Q99715 KRT8P44-201ENST00000441609 1350 ntBASIC15.19■□□□□ 0.02
COL12A1Q99715 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL12A1Q99715 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL12A1Q99715 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL12A1Q99715 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL12A1Q99715 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL12A1Q99715 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC15.18■□□□□ 0.02
COL12A1Q99715 RN7SL752P-201ENST00000463779 287 ntBASIC15.18■□□□□ 0.02
COL12A1Q99715 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL12A1Q99715 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL12A1Q99715 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC15.18■□□□□ 0.02
COL12A1Q99715 AC007064.4-201ENST00000637740 555 ntBASIC15.18■□□□□ 0.02
COL12A1Q99715 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
COL12A1Q99715 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL12A1Q99715 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL12A1Q99715 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
COL12A1Q99715 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL12A1Q99715 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC15.18■□□□□ 0.02
COL12A1Q99715 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
COL12A1Q99715 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL12A1Q99715 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL12A1Q99715 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC15.18■□□□□ 0.02
COL12A1Q99715 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
COL12A1Q99715 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL12A1Q99715 MYCLP1-201ENST00000372451 1075 ntBASIC15.18■□□□□ 0.02
COL12A1Q99715 PTCHD3P3-201ENST00000403073 906 ntBASIC15.18■□□□□ 0.02
COL12A1Q99715 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL12A1Q99715 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC15.18■□□□□ 0.02
COL12A1Q99715 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL12A1Q99715 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL12A1Q99715 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC15.18■□□□□ 0.02
COL12A1Q99715 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC15.18■□□□□ 0.02
COL12A1Q99715 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC15.18■□□□□ 0.02
COL12A1Q99715 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL12A1Q99715 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC15.18■□□□□ 0.02
COL12A1Q99715 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL12A1Q99715 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
COL12A1Q99715 AC092933.1-201ENST00000393644 945 ntBASIC15.18■□□□□ 0.02
COL12A1Q99715 MPV17-208ENST00000405076 603 ntTSL 5 BASIC15.18■□□□□ 0.02
COL12A1Q99715 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL12A1Q99715 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC15.18■□□□□ 0.02
COL12A1Q99715 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL12A1Q99715 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL12A1Q99715 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC15.17■□□□□ 0.02
COL12A1Q99715 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
COL12A1Q99715 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.17■□□□□ 0.02
COL12A1Q99715 AL109936.8-201ENST00000641772 604 ntBASIC15.17■□□□□ 0.02
COL12A1Q99715 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL12A1Q99715 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.17■□□□□ 0.02
COL12A1Q99715 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
COL12A1Q99715 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL12A1Q99715 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL12A1Q99715 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL12A1Q99715 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL12A1Q99715 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL12A1Q99715 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC15.17■□□□□ 0.02
COL12A1Q99715 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC15.17■□□□□ 0.02
COL12A1Q99715 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC15.17■□□□□ 0.02
COL12A1Q99715 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL12A1Q99715 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL12A1Q99715 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC15.17■□□□□ 0.02
COL12A1Q99715 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC15.17■□□□□ 0.02
COL12A1Q99715 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL12A1Q99715 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
COL12A1Q99715 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC15.16■□□□□ 0.02
COL12A1Q99715 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL12A1Q99715 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL12A1Q99715 ELK2AP-201ENST00000392510 1007 ntBASIC15.16■□□□□ 0.02
COL12A1Q99715 MXI1-205ENST00000393134 889 ntTSL 2 BASIC15.16■□□□□ 0.02
COL12A1Q99715 AL671277.1-201ENST00000429656 993 ntBASIC15.16■□□□□ 0.02
COL12A1Q99715 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL12A1Q99715 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.16■□□□□ 0.02
COL12A1Q99715 CD74-212ENST00000524315 584 ntTSL 5 BASIC15.16■□□□□ 0.02
COL12A1Q99715 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL12A1Q99715 AC026150.2-201ENST00000564693 1156 ntBASIC15.16■□□□□ 0.02
COL12A1Q99715 ARL16-210ENST00000574938 751 ntTSL 2 BASIC15.16■□□□□ 0.02
COL12A1Q99715 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC15.16■□□□□ 0.02
COL12A1Q99715 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC15.16■□□□□ 0.02
COL12A1Q99715 GGTLC5P-201ENST00000617623 998 ntBASIC15.16■□□□□ 0.02
COL12A1Q99715 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC15.16■□□□□ 0.02
COL12A1Q99715 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL12A1Q99715 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL12A1Q99715 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC15.16■□□□□ 0.02
COL12A1Q99715 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL12A1Q99715 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL12A1Q99715 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL12A1Q99715 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL12A1Q99715 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms