Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PKP4Q99569 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PKP4Q99569 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
PKP4Q99569 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.09■□□□□ 0.33
PKP4Q99569 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.09■□□□□ 0.33
PKP4Q99569 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17.09■□□□□ 0.33
PKP4Q99569 NUS1P1-201ENST00000446295 882 ntBASIC17.09■□□□□ 0.33
PKP4Q99569 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PKP4Q99569 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.09■□□□□ 0.33
PKP4Q99569 IGHV3-52-201ENST00000519770 353 ntBASIC17.09■□□□□ 0.33
PKP4Q99569 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.09■□□□□ 0.33
PKP4Q99569 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.09■□□□□ 0.33
PKP4Q99569 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.09■□□□□ 0.33
PKP4Q99569 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
PKP4Q99569 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PKP4Q99569 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.09■□□□□ 0.33
PKP4Q99569 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.09■□□□□ 0.33
PKP4Q99569 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.09■□□□□ 0.33
PKP4Q99569 LYSMD4-203ENST00000378904 2122 ntBASIC17.09■□□□□ 0.33
PKP4Q99569 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PKP4Q99569 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
PKP4Q99569 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PKP4Q99569 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PKP4Q99569 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
PKP4Q99569 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PKP4Q99569 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
PKP4Q99569 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
PKP4Q99569 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PKP4Q99569 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PKP4Q99569 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
PKP4Q99569 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.08■□□□□ 0.33
PKP4Q99569 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PKP4Q99569 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PKP4Q99569 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
PKP4Q99569 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
PKP4Q99569 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.08■□□□□ 0.32
PKP4Q99569 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PKP4Q99569 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PKP4Q99569 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
PKP4Q99569 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PKP4Q99569 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.08■□□□□ 0.32
PKP4Q99569 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.08■□□□□ 0.32
PKP4Q99569 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.08■□□□□ 0.32
PKP4Q99569 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.08■□□□□ 0.32
PKP4Q99569 AL139327.4-201ENST00000612362 153 ntBASIC17.08■□□□□ 0.32
PKP4Q99569 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC17.08■□□□□ 0.32
PKP4Q99569 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
PKP4Q99569 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.08■□□□□ 0.32
PKP4Q99569 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PKP4Q99569 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.08■□□□□ 0.32
PKP4Q99569 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.08■□□□□ 0.32
PKP4Q99569 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PKP4Q99569 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.08■□□□□ 0.32
PKP4Q99569 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PKP4Q99569 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
PKP4Q99569 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PKP4Q99569 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PKP4Q99569 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.08■□□□□ 0.32
PKP4Q99569 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PKP4Q99569 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.07■□□□□ 0.32
PKP4Q99569 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PKP4Q99569 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PKP4Q99569 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.07■□□□□ 0.32
PKP4Q99569 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PKP4Q99569 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
PKP4Q99569 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PKP4Q99569 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.07■□□□□ 0.32
PKP4Q99569 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
PKP4Q99569 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.07■□□□□ 0.32
PKP4Q99569 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PKP4Q99569 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
PKP4Q99569 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PKP4Q99569 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PKP4Q99569 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.07■□□□□ 0.32
PKP4Q99569 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.07■□□□□ 0.32
PKP4Q99569 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PKP4Q99569 KRT16P4-201ENST00000453883 522 ntBASIC17.07■□□□□ 0.32
PKP4Q99569 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.07■□□□□ 0.32
PKP4Q99569 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.07■□□□□ 0.32
PKP4Q99569 AC111152.3-201ENST00000569699 673 ntBASIC17.07■□□□□ 0.32
PKP4Q99569 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
PKP4Q99569 AD001527.2-201ENST00000622994 785 ntBASIC17.07■□□□□ 0.32
PKP4Q99569 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.07■□□□□ 0.32
PKP4Q99569 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.07■□□□□ 0.32
PKP4Q99569 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.07■□□□□ 0.32
PKP4Q99569 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PKP4Q99569 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PKP4Q99569 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PKP4Q99569 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
PKP4Q99569 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PKP4Q99569 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PKP4Q99569 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.06■□□□□ 0.32
PKP4Q99569 AL353593.2-201ENST00000602529 1483 ntBASIC17.06■□□□□ 0.32
PKP4Q99569 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
PKP4Q99569 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PKP4Q99569 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.06■□□□□ 0.32
PKP4Q99569 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.06■□□□□ 0.32
PKP4Q99569 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PKP4Q99569 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
PKP4Q99569 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms