Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRCH3Q96II8 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRCH3Q96II8 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRCH3Q96II8 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
LRCH3Q96II8 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRCH3Q96II8 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRCH3Q96II8 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
LRCH3Q96II8 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
LRCH3Q96II8 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRCH3Q96II8 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRCH3Q96II8 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.91■□□□□ 0.62
LRCH3Q96II8 RPL30-202ENST00000396070 440 ntTSL 2 BASIC18.91■□□□□ 0.62
LRCH3Q96II8 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
LRCH3Q96II8 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
LRCH3Q96II8 AL592309.1-201ENST00000443127 649 ntBASIC18.91■□□□□ 0.62
LRCH3Q96II8 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC18.91■□□□□ 0.62
LRCH3Q96II8 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRCH3Q96II8 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC18.91■□□□□ 0.62
LRCH3Q96II8 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC18.91■□□□□ 0.62
LRCH3Q96II8 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC18.91■□□□□ 0.62
LRCH3Q96II8 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRCH3Q96II8 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRCH3Q96II8 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRCH3Q96II8 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
LRCH3Q96II8 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC18.91■□□□□ 0.62
LRCH3Q96II8 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LRCH3Q96II8 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
LRCH3Q96II8 SDHAP2-201ENST00000455183 2001 ntBASIC18.91■□□□□ 0.62
LRCH3Q96II8 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRCH3Q96II8 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.91■□□□□ 0.62
LRCH3Q96II8 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LRCH3Q96II8 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.91■□□□□ 0.62
LRCH3Q96II8 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LRCH3Q96II8 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRCH3Q96II8 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRCH3Q96II8 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRCH3Q96II8 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRCH3Q96II8 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRCH3Q96II8 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.9■□□□□ 0.62
LRCH3Q96II8 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LRCH3Q96II8 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC18.9■□□□□ 0.62
LRCH3Q96II8 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LRCH3Q96II8 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRCH3Q96II8 PTCHD3P3-201ENST00000403073 906 ntBASIC18.9■□□□□ 0.62
LRCH3Q96II8 MIR1909-201ENST00000411312 80 ntBASIC18.9■□□□□ 0.62
LRCH3Q96II8 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LRCH3Q96II8 GPS2P2-201ENST00000430745 888 ntBASIC18.9■□□□□ 0.62
LRCH3Q96II8 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.9■□□□□ 0.62
LRCH3Q96II8 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LRCH3Q96II8 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.9■□□□□ 0.62
LRCH3Q96II8 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.9■□□□□ 0.62
LRCH3Q96II8 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRCH3Q96II8 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRCH3Q96II8 AC017083.2-201ENST00000608069 979 ntBASIC18.9■□□□□ 0.62
LRCH3Q96II8 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.9■□□□□ 0.62
LRCH3Q96II8 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRCH3Q96II8 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
LRCH3Q96II8 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
LRCH3Q96II8 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LRCH3Q96II8 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.9■□□□□ 0.62
LRCH3Q96II8 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.9■□□□□ 0.62
LRCH3Q96II8 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LRCH3Q96II8 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
LRCH3Q96II8 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.89■□□□□ 0.62
LRCH3Q96II8 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.62
LRCH3Q96II8 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LRCH3Q96II8 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.89■□□□□ 0.61
LRCH3Q96II8 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LRCH3Q96II8 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.89■□□□□ 0.61
LRCH3Q96II8 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.89■□□□□ 0.61
LRCH3Q96II8 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LRCH3Q96II8 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LRCH3Q96II8 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LRCH3Q96II8 AC004945.1-201ENST00000416738 983 ntBASIC18.89■□□□□ 0.61
LRCH3Q96II8 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC18.89■□□□□ 0.61
LRCH3Q96II8 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LRCH3Q96II8 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LRCH3Q96II8 SPDYE11-202ENST00000450699 704 ntBASIC18.89■□□□□ 0.61
LRCH3Q96II8 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC18.89■□□□□ 0.61
LRCH3Q96II8 AC122714.2-201ENST00000502787 707 ntBASIC18.89■□□□□ 0.61
LRCH3Q96II8 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC18.89■□□□□ 0.61
LRCH3Q96II8 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC18.89■□□□□ 0.61
LRCH3Q96II8 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC18.89■□□□□ 0.61
LRCH3Q96II8 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC18.89■□□□□ 0.61
LRCH3Q96II8 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LRCH3Q96II8 SPDYE9P-201ENST00000570642 692 ntBASIC18.89■□□□□ 0.61
LRCH3Q96II8 SPDYE10P-202ENST00000612005 668 ntBASIC18.89■□□□□ 0.61
LRCH3Q96II8 SPDYE8P-202ENST00000612377 668 ntBASIC18.89■□□□□ 0.61
LRCH3Q96II8 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
LRCH3Q96II8 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.89■□□□□ 0.61
LRCH3Q96II8 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.89■□□□□ 0.61
LRCH3Q96II8 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LRCH3Q96II8 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
LRCH3Q96II8 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
LRCH3Q96II8 AC010460.3-201ENST00000511359 1579 ntBASIC18.89■□□□□ 0.61
LRCH3Q96II8 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
LRCH3Q96II8 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LRCH3Q96II8 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LRCH3Q96II8 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
LRCH3Q96II8 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms