Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 MINOS1P3-201ENST00000457048 203 ntBASIC20.66■□□□□ 0.9
BRF1Q92994 AP000867.3-201ENST00000524675 377 ntBASIC20.66■□□□□ 0.9
BRF1Q92994 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
BRF1Q92994 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC20.66■□□□□ 0.9
BRF1Q92994 AC074051.2-201ENST00000565115 352 ntBASIC20.66■□□□□ 0.9
BRF1Q92994 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC20.66■□□□□ 0.9
BRF1Q92994 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.66■□□□□ 0.9
BRF1Q92994 AC011467.2-201ENST00000598425 242 ntBASIC20.66■□□□□ 0.9
BRF1Q92994 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC20.66■□□□□ 0.9
BRF1Q92994 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
BRF1Q92994 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
BRF1Q92994 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
BRF1Q92994 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
BRF1Q92994 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC20.66■□□□□ 0.9
BRF1Q92994 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC20.66■□□□□ 0.9
BRF1Q92994 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
BRF1Q92994 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
BRF1Q92994 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
BRF1Q92994 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC20.66■□□□□ 0.9
BRF1Q92994 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
BRF1Q92994 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRF1Q92994 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRF1Q92994 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRF1Q92994 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC20.65■□□□□ 0.9
BRF1Q92994 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRF1Q92994 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
BRF1Q92994 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRF1Q92994 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
BRF1Q92994 KRT8P10-201ENST00000450021 1447 ntBASIC20.65■□□□□ 0.9
BRF1Q92994 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
BRF1Q92994 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRF1Q92994 CCS-201ENST00000310190 942 ntTSL 5 BASIC20.65■□□□□ 0.9
BRF1Q92994 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
BRF1Q92994 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.65■□□□□ 0.9
BRF1Q92994 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
BRF1Q92994 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC20.65■□□□□ 0.9
BRF1Q92994 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC20.65■□□□□ 0.9
BRF1Q92994 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
BRF1Q92994 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRF1Q92994 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRF1Q92994 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
BRF1Q92994 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRF1Q92994 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
BRF1Q92994 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRF1Q92994 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRF1Q92994 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
BRF1Q92994 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
BRF1Q92994 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
BRF1Q92994 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
BRF1Q92994 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC20.65■□□□□ 0.9
BRF1Q92994 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
BRF1Q92994 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
BRF1Q92994 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
BRF1Q92994 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
BRF1Q92994 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
BRF1Q92994 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
BRF1Q92994 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
BRF1Q92994 AP001094.4-201ENST00000579008 2176 ntBASIC20.64■□□□□ 0.89
BRF1Q92994 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
BRF1Q92994 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
BRF1Q92994 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
BRF1Q92994 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC20.64■□□□□ 0.89
BRF1Q92994 TK1-204ENST00000590430 683 ntTSL 3 BASIC20.64■□□□□ 0.89
BRF1Q92994 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
BRF1Q92994 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC20.64■□□□□ 0.89
BRF1Q92994 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC20.64■□□□□ 0.89
BRF1Q92994 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
BRF1Q92994 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
BRF1Q92994 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
BRF1Q92994 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
BRF1Q92994 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
BRF1Q92994 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC20.64■□□□□ 0.89
BRF1Q92994 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC20.64■□□□□ 0.89
BRF1Q92994 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
BRF1Q92994 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
BRF1Q92994 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
BRF1Q92994 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
BRF1Q92994 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
BRF1Q92994 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
BRF1Q92994 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC20.63■□□□□ 0.89
BRF1Q92994 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
BRF1Q92994 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
BRF1Q92994 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
BRF1Q92994 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
BRF1Q92994 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
BRF1Q92994 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC20.63■□□□□ 0.89
BRF1Q92994 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
BRF1Q92994 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
BRF1Q92994 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
BRF1Q92994 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC20.63■□□□□ 0.89
BRF1Q92994 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
BRF1Q92994 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
BRF1Q92994 DANCR-204ENST00000444958 709 ntTSL 3 BASIC20.63■□□□□ 0.89
BRF1Q92994 BET1L-206ENST00000486280 665 ntTSL 3 BASIC20.63■□□□□ 0.89
BRF1Q92994 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC20.63■□□□□ 0.89
BRF1Q92994 AC096582.2-201ENST00000510860 516 ntBASIC20.63■□□□□ 0.89
BRF1Q92994 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
BRF1Q92994 AC092329.2-201ENST00000598402 547 ntBASIC20.63■□□□□ 0.89
BRF1Q92994 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
BRF1Q92994 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms