Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 AC078925.2-201ENST00000624013 1973 ntBASIC10.93□□□□□ -0.66
LINC00643Q86TS7 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
LINC00643Q86TS7 AC067750.1-201ENST00000608826 6545 ntBASIC10.92□□□□□ -0.66
LINC00643Q86TS7 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 AL391807.1-203ENST00000604392 2365 ntBASIC10.92□□□□□ -0.66
LINC00643Q86TS7 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 RCC2P6-201ENST00000526625 1557 ntBASIC10.92□□□□□ -0.66
LINC00643Q86TS7 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 AC091799.1-201ENST00000422823 811 ntBASIC10.92□□□□□ -0.66
LINC00643Q86TS7 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 AC099791.2-201ENST00000605725 427 ntBASIC10.92□□□□□ -0.66
LINC00643Q86TS7 AC068587.9-201ENST00000641814 219 ntBASIC10.92□□□□□ -0.66
LINC00643Q86TS7 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 PTENP1-202ENST00000532280 3996 ntBASIC10.92□□□□□ -0.66
LINC00643Q86TS7 ST20-AS1-201ENST00000560255 4223 ntBASIC10.92□□□□□ -0.66
LINC00643Q86TS7 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 SRC-202ENST00000373558 4304 ntTSL 5 BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 AC013268.4-201ENST00000637413 2228 ntBASIC10.92□□□□□ -0.66
LINC00643Q86TS7 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC10.92□□□□□ -0.66
LINC00643Q86TS7 AC092364.2-201ENST00000596710 2692 ntBASIC10.92□□□□□ -0.66
LINC00643Q86TS7 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 LINC00304-203ENST00000565008 1864 ntBASIC10.91□□□□□ -0.66
LINC00643Q86TS7 AC015656.1-201ENST00000624209 3578 ntBASIC10.91□□□□□ -0.66
LINC00643Q86TS7 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 AC023157.3-201ENST00000619086 2088 ntBASIC10.91□□□□□ -0.66
LINC00643Q86TS7 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 CD72-202ENST00000378430 585 ntTSL 3 BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 NME1-207ENST00000480143 964 ntTSL 2 BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms