Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.14■□□□□ 0.81
HMGCS2P54868 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.14■□□□□ 0.81
HMGCS2P54868 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
HMGCS2P54868 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC20.14■□□□□ 0.81
HMGCS2P54868 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
HMGCS2P54868 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HMGCS2P54868 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HMGCS2P54868 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
HMGCS2P54868 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC20.14■□□□□ 0.81
HMGCS2P54868 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
HMGCS2P54868 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC20.14■□□□□ 0.81
HMGCS2P54868 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC20.14■□□□□ 0.81
HMGCS2P54868 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC20.14■□□□□ 0.81
HMGCS2P54868 AC068137.2-201ENST00000605408 478 ntBASIC20.14■□□□□ 0.81
HMGCS2P54868 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
HMGCS2P54868 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
HMGCS2P54868 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HMGCS2P54868 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HMGCS2P54868 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HMGCS2P54868 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HMGCS2P54868 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGCS2P54868 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC20.13■□□□□ 0.81
HMGCS2P54868 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC20.13■□□□□ 0.81
HMGCS2P54868 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGCS2P54868 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HMGCS2P54868 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGCS2P54868 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.13■□□□□ 0.81
HMGCS2P54868 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HMGCS2P54868 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC20.13■□□□□ 0.81
HMGCS2P54868 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC20.13■□□□□ 0.81
HMGCS2P54868 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGCS2P54868 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
HMGCS2P54868 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGCS2P54868 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
HMGCS2P54868 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC20.13■□□□□ 0.81
HMGCS2P54868 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC20.13■□□□□ 0.81
HMGCS2P54868 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGCS2P54868 MIR3197-201ENST00000582241 73 ntBASIC20.13■□□□□ 0.81
HMGCS2P54868 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC20.13■□□□□ 0.81
HMGCS2P54868 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGCS2P54868 MED16-214ENST00000617672 554 ntTSL 5 BASIC20.13■□□□□ 0.81
HMGCS2P54868 AL513210.1-201ENST00000629608 234 ntBASIC20.13■□□□□ 0.81
HMGCS2P54868 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGCS2P54868 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HMGCS2P54868 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
HMGCS2P54868 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
HMGCS2P54868 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
HMGCS2P54868 AMT-250ENST00000637682 1823 ntTSL 5 BASIC20.13■□□□□ 0.81
HMGCS2P54868 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC20.13■□□□□ 0.81
HMGCS2P54868 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
HMGCS2P54868 AL135999.2-201ENST00000622438 1686 ntBASIC20.13■□□□□ 0.81
HMGCS2P54868 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.13■□□□□ 0.81
HMGCS2P54868 AC092919.2-201ENST00000623631 1645 ntBASIC20.13■□□□□ 0.81
HMGCS2P54868 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS2P54868 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS2P54868 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC20.12■□□□□ 0.81
HMGCS2P54868 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS2P54868 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS2P54868 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC20.12■□□□□ 0.81
HMGCS2P54868 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS2P54868 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC20.12■□□□□ 0.81
HMGCS2P54868 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS2P54868 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS2P54868 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS2P54868 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS2P54868 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS2P54868 DDT-204ENST00000404092 805 ntTSL 3 BASIC20.12■□□□□ 0.81
HMGCS2P54868 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS2P54868 FAM185BP-201ENST00000443595 716 ntBASIC20.12■□□□□ 0.81
HMGCS2P54868 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC20.12■□□□□ 0.81
HMGCS2P54868 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC20.12■□□□□ 0.81
HMGCS2P54868 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS2P54868 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC20.12■□□□□ 0.81
HMGCS2P54868 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC20.12■□□□□ 0.81
HMGCS2P54868 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS2P54868 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS2P54868 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC20.12■□□□□ 0.81
HMGCS2P54868 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS2P54868 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS2P54868 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS2P54868 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS2P54868 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS2P54868 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HMGCS2P54868 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HMGCS2P54868 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC20.11■□□□□ 0.81
HMGCS2P54868 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.11■□□□□ 0.81
HMGCS2P54868 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HMGCS2P54868 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC20.11■□□□□ 0.81
HMGCS2P54868 AC046185.3-201ENST00000623228 1824 ntBASIC20.11■□□□□ 0.81
HMGCS2P54868 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
HMGCS2P54868 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
HMGCS2P54868 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
HMGCS2P54868 GOLGA6L17P-202ENST00000614358 1398 ntBASIC20.11■□□□□ 0.81
HMGCS2P54868 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HMGCS2P54868 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HMGCS2P54868 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC20.11■□□□□ 0.81
HMGCS2P54868 AC004461.1-201ENST00000412461 403 ntBASIC20.11■□□□□ 0.81
HMGCS2P54868 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
HMGCS2P54868 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC20.11■□□□□ 0.81
HMGCS2P54868 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms