Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.29■□□□□ 0.52
EPHB3P54753 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC18.29■□□□□ 0.52
EPHB3P54753 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC18.29■□□□□ 0.52
EPHB3P54753 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.29■□□□□ 0.52
EPHB3P54753 AL353135.1-201ENST00000606729 504 ntBASIC18.29■□□□□ 0.52
EPHB3P54753 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
EPHB3P54753 AC004790.2-201ENST00000623588 572 ntBASIC18.29■□□□□ 0.52
EPHB3P54753 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
EPHB3P54753 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
EPHB3P54753 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
EPHB3P54753 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
EPHB3P54753 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
EPHB3P54753 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.29■□□□□ 0.52
EPHB3P54753 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
EPHB3P54753 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
EPHB3P54753 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
EPHB3P54753 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.29■□□□□ 0.52
EPHB3P54753 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
EPHB3P54753 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
EPHB3P54753 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
EPHB3P54753 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.28■□□□□ 0.52
EPHB3P54753 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.28■□□□□ 0.52
EPHB3P54753 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
EPHB3P54753 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.28■□□□□ 0.52
EPHB3P54753 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
EPHB3P54753 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC18.28■□□□□ 0.52
EPHB3P54753 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.28■□□□□ 0.52
EPHB3P54753 HNRNPA1P28-201ENST00000424481 961 ntBASIC18.28■□□□□ 0.52
EPHB3P54753 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.28■□□□□ 0.52
EPHB3P54753 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.28■□□□□ 0.52
EPHB3P54753 AC112482.1-201ENST00000492080 688 ntBASIC18.28■□□□□ 0.52
EPHB3P54753 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
EPHB3P54753 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.28■□□□□ 0.52
EPHB3P54753 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.28■□□□□ 0.52
EPHB3P54753 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC18.28■□□□□ 0.52
EPHB3P54753 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.28■□□□□ 0.52
EPHB3P54753 GGTLC5P-201ENST00000617623 998 ntBASIC18.28■□□□□ 0.52
EPHB3P54753 AC055717.3-201ENST00000622967 595 ntBASIC18.28■□□□□ 0.52
EPHB3P54753 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
EPHB3P54753 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
EPHB3P54753 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
EPHB3P54753 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
EPHB3P54753 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
EPHB3P54753 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
EPHB3P54753 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
EPHB3P54753 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
EPHB3P54753 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC18.28■□□□□ 0.52
EPHB3P54753 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.28■□□□□ 0.52
EPHB3P54753 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
EPHB3P54753 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
EPHB3P54753 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
EPHB3P54753 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.27■□□□□ 0.52
EPHB3P54753 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
EPHB3P54753 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
EPHB3P54753 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
EPHB3P54753 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
EPHB3P54753 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
EPHB3P54753 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
EPHB3P54753 AP002414.1-201ENST00000391405 1147 ntBASIC18.27■□□□□ 0.52
EPHB3P54753 MRPL20P1-201ENST00000400819 433 ntBASIC18.27■□□□□ 0.52
EPHB3P54753 PTCHD3P3-201ENST00000403073 906 ntBASIC18.27■□□□□ 0.52
EPHB3P54753 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.27■□□□□ 0.52
EPHB3P54753 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.27■□□□□ 0.52
EPHB3P54753 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.27■□□□□ 0.52
EPHB3P54753 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC18.27■□□□□ 0.52
EPHB3P54753 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.27■□□□□ 0.52
EPHB3P54753 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
EPHB3P54753 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
EPHB3P54753 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
EPHB3P54753 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.27■□□□□ 0.51
EPHB3P54753 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
EPHB3P54753 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
EPHB3P54753 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
EPHB3P54753 ABALON-201ENST00000629058 1903 ntBASIC18.27■□□□□ 0.51
EPHB3P54753 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
EPHB3P54753 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.27■□□□□ 0.51
EPHB3P54753 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
EPHB3P54753 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
EPHB3P54753 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
EPHB3P54753 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
EPHB3P54753 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
EPHB3P54753 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
EPHB3P54753 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
EPHB3P54753 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
EPHB3P54753 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
EPHB3P54753 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
EPHB3P54753 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
EPHB3P54753 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.26■□□□□ 0.51
EPHB3P54753 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC18.26■□□□□ 0.51
EPHB3P54753 CD63-210ENST00000550776 870 ntTSL 5 BASIC18.26■□□□□ 0.51
EPHB3P54753 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC18.26■□□□□ 0.51
EPHB3P54753 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
EPHB3P54753 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
EPHB3P54753 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
EPHB3P54753 AC002310.6-201ENST00000624451 1377 ntBASIC18.26■□□□□ 0.51
EPHB3P54753 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
EPHB3P54753 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
EPHB3P54753 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.26■□□□□ 0.51
EPHB3P54753 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC18.26■□□□□ 0.51
EPHB3P54753 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms