Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIG3P49916 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIG3P49916 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC18.51■□□□□ 0.55
LIG3P49916 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
LIG3P49916 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
LIG3P49916 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIG3P49916 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.5■□□□□ 0.55
LIG3P49916 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
LIG3P49916 KRT8P50-201ENST00000562022 1438 ntBASIC18.5■□□□□ 0.55
LIG3P49916 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIG3P49916 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIG3P49916 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
LIG3P49916 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
LIG3P49916 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIG3P49916 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIG3P49916 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.5■□□□□ 0.55
LIG3P49916 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
LIG3P49916 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIG3P49916 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIG3P49916 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIG3P49916 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIG3P49916 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.5■□□□□ 0.55
LIG3P49916 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.5■□□□□ 0.55
LIG3P49916 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.5■□□□□ 0.55
LIG3P49916 AL136038.3-201ENST00000561909 1096 ntBASIC18.5■□□□□ 0.55
LIG3P49916 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC18.5■□□□□ 0.55
LIG3P49916 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.5■□□□□ 0.55
LIG3P49916 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIG3P49916 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIG3P49916 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIG3P49916 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
LIG3P49916 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LIG3P49916 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
LIG3P49916 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
LIG3P49916 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIG3P49916 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC18.5■□□□□ 0.55
LIG3P49916 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
LIG3P49916 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIG3P49916 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
LIG3P49916 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIG3P49916 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LIG3P49916 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
LIG3P49916 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
LIG3P49916 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.49■□□□□ 0.55
LIG3P49916 AC005332.1-201ENST00000577698 1310 ntBASIC18.49■□□□□ 0.55
LIG3P49916 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIG3P49916 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIG3P49916 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.49■□□□□ 0.55
LIG3P49916 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIG3P49916 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIG3P49916 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIG3P49916 DOC2GP-204ENST00000639052 2548 ntBASIC18.49■□□□□ 0.55
LIG3P49916 LINC02199-201ENST00000506655 2702 ntBASIC18.49■□□□□ 0.55
LIG3P49916 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIG3P49916 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
LIG3P49916 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIG3P49916 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.49■□□□□ 0.55
LIG3P49916 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC18.49■□□□□ 0.55
LIG3P49916 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIG3P49916 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LIG3P49916 SPDYE13P-201ENST00000445314 798 ntBASIC18.49■□□□□ 0.55
LIG3P49916 KRT18P41-201ENST00000518924 1277 ntBASIC18.49■□□□□ 0.55
LIG3P49916 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.49■□□□□ 0.55
LIG3P49916 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.49■□□□□ 0.55
LIG3P49916 MIR3180-4-201ENST00000582223 153 ntBASIC18.49■□□□□ 0.55
LIG3P49916 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LIG3P49916 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIG3P49916 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
LIG3P49916 AP000550.4-202ENST00000639755 178 ntBASIC18.49■□□□□ 0.55
LIG3P49916 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIG3P49916 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LIG3P49916 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
LIG3P49916 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIG3P49916 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIG3P49916 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
LIG3P49916 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIG3P49916 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
LIG3P49916 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LIG3P49916 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIG3P49916 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIG3P49916 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
LIG3P49916 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIG3P49916 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LIG3P49916 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC18.48■□□□□ 0.55
LIG3P49916 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIG3P49916 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIG3P49916 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIG3P49916 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.48■□□□□ 0.55
LIG3P49916 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIG3P49916 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIG3P49916 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.48■□□□□ 0.55
LIG3P49916 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIG3P49916 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIG3P49916 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIG3P49916 PGR-209ENST00000617858 2816 ntTSL 5 BASIC18.48■□□□□ 0.55
LIG3P49916 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
LIG3P49916 IER3-202ENST00000376377 1350 ntBASIC18.48■□□□□ 0.55
LIG3P49916 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
LIG3P49916 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.48■□□□□ 0.55
LIG3P49916 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms