Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.37■□□□□ 0.37
CXCL12P48061 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CXCL12P48061 AC129492.6-201ENST00000611383 1305 ntBASIC17.37■□□□□ 0.37
CXCL12P48061 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.37■□□□□ 0.37
CXCL12P48061 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CXCL12P48061 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CXCL12P48061 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CXCL12P48061 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.36■□□□□ 0.37
CXCL12P48061 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CXCL12P48061 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.36■□□□□ 0.37
CXCL12P48061 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CXCL12P48061 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CXCL12P48061 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CXCL12P48061 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CXCL12P48061 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.36■□□□□ 0.37
CXCL12P48061 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CXCL12P48061 METTL26-204ENST00000397665 558 ntTSL 2 BASIC17.36■□□□□ 0.37
CXCL12P48061 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
CXCL12P48061 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CXCL12P48061 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CXCL12P48061 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.36■□□□□ 0.37
CXCL12P48061 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.36■□□□□ 0.37
CXCL12P48061 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CXCL12P48061 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CXCL12P48061 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CXCL12P48061 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.36■□□□□ 0.37
CXCL12P48061 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CXCL12P48061 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CXCL12P48061 HCG11-201ENST00000411553 5696 ntBASIC17.36■□□□□ 0.37
CXCL12P48061 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CXCL12P48061 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL12P48061 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL12P48061 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CXCL12P48061 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL12P48061 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL12P48061 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL12P48061 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.35■□□□□ 0.37
CXCL12P48061 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL12P48061 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CXCL12P48061 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.35■□□□□ 0.37
CXCL12P48061 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL12P48061 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL12P48061 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL12P48061 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.35■□□□□ 0.37
CXCL12P48061 HNRNPA1P40-201ENST00000426371 1278 ntBASIC17.35■□□□□ 0.37
CXCL12P48061 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL12P48061 OARD1-208ENST00000469104 704 ntTSL 2 BASIC17.35■□□□□ 0.37
CXCL12P48061 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.35■□□□□ 0.37
CXCL12P48061 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.35■□□□□ 0.37
CXCL12P48061 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC17.35■□□□□ 0.37
CXCL12P48061 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC17.35■□□□□ 0.37
CXCL12P48061 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.35■□□□□ 0.37
CXCL12P48061 AC087641.1-201ENST00000557561 1021 ntBASIC17.35■□□□□ 0.37
CXCL12P48061 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL12P48061 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC17.35■□□□□ 0.37
CXCL12P48061 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL12P48061 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL12P48061 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL12P48061 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL12P48061 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.35■□□□□ 0.37
CXCL12P48061 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.35■□□□□ 0.37
CXCL12P48061 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL12P48061 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.35■□□□□ 0.37
CXCL12P48061 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.35■□□□□ 0.37
CXCL12P48061 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.35■□□□□ 0.37
CXCL12P48061 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.35■□□□□ 0.37
CXCL12P48061 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL12P48061 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.35■□□□□ 0.37
CXCL12P48061 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.35■□□□□ 0.37
CXCL12P48061 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL12P48061 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL12P48061 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL12P48061 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL12P48061 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.35■□□□□ 0.37
CXCL12P48061 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL12P48061 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CXCL12P48061 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CXCL12P48061 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.34■□□□□ 0.37
CXCL12P48061 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CXCL12P48061 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CXCL12P48061 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CXCL12P48061 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.34■□□□□ 0.37
CXCL12P48061 MIR943-201ENST00000401286 94 ntBASIC17.34■□□□□ 0.37
CXCL12P48061 AC236430.1-201ENST00000402231 743 ntBASIC17.34■□□□□ 0.37
CXCL12P48061 TUBB3P1-201ENST00000405796 1332 ntBASIC17.34■□□□□ 0.37
CXCL12P48061 KRT18P32-201ENST00000424695 1287 ntBASIC17.34■□□□□ 0.37
CXCL12P48061 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CXCL12P48061 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CXCL12P48061 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CXCL12P48061 TSPY16P-201ENST00000449843 468 ntBASIC17.34■□□□□ 0.37
CXCL12P48061 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CXCL12P48061 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.34■□□□□ 0.37
CXCL12P48061 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CXCL12P48061 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.34■□□□□ 0.37
CXCL12P48061 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CXCL12P48061 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC17.34■□□□□ 0.37
CXCL12P48061 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC17.34■□□□□ 0.37
CXCL12P48061 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CXCL12P48061 POLD4-211ENST00000539074 714 ntTSL 3 BASIC17.34■□□□□ 0.37
CXCL12P48061 AL512356.2-201ENST00000546955 174 ntBASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms