Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
RFC3P40938 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.09■□□□□ 0.17
RFC3P40938 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
RFC3P40938 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
RFC3P40938 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.09■□□□□ 0.17
RFC3P40938 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RFC3P40938 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
RFC3P40938 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
RFC3P40938 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
RFC3P40938 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
RFC3P40938 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
RFC3P40938 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
RFC3P40938 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC16.08■□□□□ 0.17
RFC3P40938 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
RFC3P40938 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
RFC3P40938 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
RFC3P40938 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
RFC3P40938 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.08■□□□□ 0.17
RFC3P40938 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.08■□□□□ 0.16
RFC3P40938 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RFC3P40938 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RFC3P40938 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.08■□□□□ 0.16
RFC3P40938 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
RFC3P40938 RPL13AP23-201ENST00000480739 586 ntBASIC16.08■□□□□ 0.16
RFC3P40938 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.08■□□□□ 0.16
RFC3P40938 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RFC3P40938 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.08■□□□□ 0.16
RFC3P40938 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.08■□□□□ 0.16
RFC3P40938 AL139288.1-201ENST00000623748 933 ntBASIC16.08■□□□□ 0.16
RFC3P40938 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RFC3P40938 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RFC3P40938 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.08■□□□□ 0.16
RFC3P40938 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.08■□□□□ 0.16
RFC3P40938 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RFC3P40938 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RFC3P40938 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RFC3P40938 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RFC3P40938 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC16.08■□□□□ 0.16
RFC3P40938 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RFC3P40938 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.07■□□□□ 0.16
RFC3P40938 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.07■□□□□ 0.16
RFC3P40938 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFC3P40938 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.07■□□□□ 0.16
RFC3P40938 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFC3P40938 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFC3P40938 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFC3P40938 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RFC3P40938 TNRC18P3-201ENST00000441896 2691 ntBASIC16.07■□□□□ 0.16
RFC3P40938 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RFC3P40938 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.07■□□□□ 0.16
RFC3P40938 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFC3P40938 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFC3P40938 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFC3P40938 RPS2P28-201ENST00000314255 741 ntBASIC16.07■□□□□ 0.16
RFC3P40938 MIR574-201ENST00000385209 96 ntBASIC16.07■□□□□ 0.16
RFC3P40938 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
RFC3P40938 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.07■□□□□ 0.16
RFC3P40938 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.07■□□□□ 0.16
RFC3P40938 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.07■□□□□ 0.16
RFC3P40938 POLD2P1-201ENST00000511220 997 ntBASIC16.07■□□□□ 0.16
RFC3P40938 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.07■□□□□ 0.16
RFC3P40938 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RFC3P40938 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.07■□□□□ 0.16
RFC3P40938 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
RFC3P40938 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RFC3P40938 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.07■□□□□ 0.16
RFC3P40938 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
RFC3P40938 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RFC3P40938 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFC3P40938 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFC3P40938 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
RFC3P40938 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFC3P40938 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.07■□□□□ 0.16
RFC3P40938 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
RFC3P40938 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.07■□□□□ 0.16
RFC3P40938 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
RFC3P40938 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFC3P40938 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFC3P40938 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFC3P40938 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
RFC3P40938 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFC3P40938 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFC3P40938 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.06■□□□□ 0.16
RFC3P40938 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
RFC3P40938 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFC3P40938 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFC3P40938 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC16.06■□□□□ 0.16
RFC3P40938 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC16.06■□□□□ 0.16
RFC3P40938 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFC3P40938 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFC3P40938 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFC3P40938 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
RFC3P40938 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFC3P40938 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFC3P40938 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
RFC3P40938 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.06■□□□□ 0.16
RFC3P40938 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
RFC3P40938 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFC3P40938 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
RFC3P40938 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms