Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
RXRBP28702 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC22.73■■□□□ 1.23
RXRBP28702 SNX29P1-201ENST00000548357 1007 ntBASIC22.73■■□□□ 1.23
RXRBP28702 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC22.73■■□□□ 1.23
RXRBP28702 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC22.73■■□□□ 1.23
RXRBP28702 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC22.73■■□□□ 1.23
RXRBP28702 CHCHD2P3-201ENST00000603038 451 ntBASIC22.73■■□□□ 1.23
RXRBP28702 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC22.73■■□□□ 1.23
RXRBP28702 RAB34-223ENST00000636154 730 ntTSL 2 BASIC22.73■■□□□ 1.23
RXRBP28702 AC004840.1-201ENST00000636359 365 ntBASIC22.73■■□□□ 1.23
RXRBP28702 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC22.73■■□□□ 1.23
RXRBP28702 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC22.73■■□□□ 1.23
RXRBP28702 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC22.73■■□□□ 1.23
RXRBP28702 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC22.73■■□□□ 1.23
RXRBP28702 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
RXRBP28702 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
RXRBP28702 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC22.73■■□□□ 1.23
RXRBP28702 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC22.72■■□□□ 1.23
RXRBP28702 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC22.72■■□□□ 1.23
RXRBP28702 GMCL1P1-201ENST00000463439 1581 ntBASIC22.72■■□□□ 1.23
RXRBP28702 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
RXRBP28702 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC22.72■■□□□ 1.23
RXRBP28702 HMGA1P7-201ENST00000406908 502 ntBASIC22.72■■□□□ 1.23
RXRBP28702 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
RXRBP28702 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
RXRBP28702 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC22.72■■□□□ 1.23
RXRBP28702 SATB1-217ENST00000493952 626 ntTSL 3 BASIC22.72■■□□□ 1.23
RXRBP28702 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC22.72■■□□□ 1.23
RXRBP28702 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC22.72■■□□□ 1.23
RXRBP28702 FLYWCH1P1-201ENST00000460917 1874 ntBASIC22.72■■□□□ 1.23
RXRBP28702 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
RXRBP28702 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC22.72■■□□□ 1.23
RXRBP28702 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC22.72■■□□□ 1.23
RXRBP28702 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC22.72■■□□□ 1.23
RXRBP28702 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC22.72■■□□□ 1.23
RXRBP28702 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC22.72■■□□□ 1.23
RXRBP28702 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC22.72■■□□□ 1.23
RXRBP28702 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
RXRBP28702 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
RXRBP28702 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
RXRBP28702 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
RXRBP28702 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC22.71■■□□□ 1.23
RXRBP28702 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC22.71■■□□□ 1.23
RXRBP28702 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
RXRBP28702 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC22.71■■□□□ 1.23
RXRBP28702 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC22.71■■□□□ 1.23
RXRBP28702 MIR1908-201ENST00000410394 80 ntBASIC22.71■■□□□ 1.23
RXRBP28702 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC22.71■■□□□ 1.23
RXRBP28702 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC22.71■■□□□ 1.23
RXRBP28702 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC22.71■■□□□ 1.23
RXRBP28702 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC22.71■■□□□ 1.23
RXRBP28702 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC22.71■■□□□ 1.23
RXRBP28702 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC22.71■■□□□ 1.23
RXRBP28702 AC244093.1-201ENST00000610837 814 ntBASIC22.71■■□□□ 1.23
RXRBP28702 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
RXRBP28702 AC087499.5-201ENST00000452760 1342 ntBASIC22.71■■□□□ 1.23
RXRBP28702 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC22.71■■□□□ 1.23
RXRBP28702 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
RXRBP28702 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
RXRBP28702 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.22
RXRBP28702 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
RXRBP28702 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
RXRBP28702 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
RXRBP28702 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC22.7■■□□□ 1.22
RXRBP28702 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC22.7■■□□□ 1.22
RXRBP28702 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC22.7■■□□□ 1.22
RXRBP28702 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC22.7■■□□□ 1.22
RXRBP28702 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC22.7■■□□□ 1.22
RXRBP28702 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC22.7■■□□□ 1.22
RXRBP28702 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC22.7■■□□□ 1.22
RXRBP28702 WASH6P-202ENST00000359512 1437 ntBASIC22.7■■□□□ 1.22
RXRBP28702 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC22.7■■□□□ 1.22
RXRBP28702 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
RXRBP28702 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
RXRBP28702 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
RXRBP28702 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.22
RXRBP28702 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC22.7■■□□□ 1.22
RXRBP28702 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC22.7■■□□□ 1.22
RXRBP28702 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
RXRBP28702 AC100803.2-201ENST00000562459 1963 ntBASIC22.69■■□□□ 1.22
RXRBP28702 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
RXRBP28702 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
RXRBP28702 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
RXRBP28702 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
RXRBP28702 HIST1H2BPS3-201ENST00000419683 341 ntBASIC22.69■■□□□ 1.22
RXRBP28702 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC22.69■■□□□ 1.22
RXRBP28702 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
RXRBP28702 MMP17-203ENST00000535004 719 ntTSL 3 BASIC22.69■■□□□ 1.22
RXRBP28702 AC007967.4-201ENST00000614700 386 ntBASIC22.69■■□□□ 1.22
RXRBP28702 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
RXRBP28702 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
RXRBP28702 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
RXRBP28702 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
RXRBP28702 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
RXRBP28702 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
RXRBP28702 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
RXRBP28702 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC22.68■■□□□ 1.22
RXRBP28702 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC22.68■■□□□ 1.22
RXRBP28702 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
RXRBP28702 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms