Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMARCA1P28370 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SMARCA1P28370 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SMARCA1P28370 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC20.09■□□□□ 0.81
SMARCA1P28370 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SMARCA1P28370 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC20.08■□□□□ 0.81
SMARCA1P28370 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
SMARCA1P28370 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
SMARCA1P28370 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
SMARCA1P28370 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC20.08■□□□□ 0.81
SMARCA1P28370 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC20.08■□□□□ 0.81
SMARCA1P28370 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC20.08■□□□□ 0.81
SMARCA1P28370 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC20.08■□□□□ 0.81
SMARCA1P28370 ETFA-208ENST00000559602 792 ntTSL 3 BASIC20.08■□□□□ 0.81
SMARCA1P28370 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC20.08■□□□□ 0.81
SMARCA1P28370 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SMARCA1P28370 PRKN-208ENST00000610470 531 ntTSL 2 BASIC20.08■□□□□ 0.81
SMARCA1P28370 PRKN-209ENST00000612485 225 ntTSL 5 BASIC20.08■□□□□ 0.81
SMARCA1P28370 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC20.08■□□□□ 0.81
SMARCA1P28370 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
SMARCA1P28370 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SMARCA1P28370 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SMARCA1P28370 AC018470.1-201ENST00000624790 3129 ntBASIC20.08■□□□□ 0.8
SMARCA1P28370 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SMARCA1P28370 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SMARCA1P28370 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMARCA1P28370 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SMARCA1P28370 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMARCA1P28370 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMARCA1P28370 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMARCA1P28370 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMARCA1P28370 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMARCA1P28370 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SMARCA1P28370 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC20.07■□□□□ 0.8
SMARCA1P28370 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC20.07■□□□□ 0.8
SMARCA1P28370 AC073621.1-201ENST00000392730 636 ntBASIC20.07■□□□□ 0.8
SMARCA1P28370 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC20.07■□□□□ 0.8
SMARCA1P28370 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC20.07■□□□□ 0.8
SMARCA1P28370 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMARCA1P28370 AC093909.1-201ENST00000504731 1122 ntBASIC20.07■□□□□ 0.8
SMARCA1P28370 AC105339.3-201ENST00000560043 636 ntBASIC20.07■□□□□ 0.8
SMARCA1P28370 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC20.07■□□□□ 0.8
SMARCA1P28370 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC20.07■□□□□ 0.8
SMARCA1P28370 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
SMARCA1P28370 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
SMARCA1P28370 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SMARCA1P28370 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC20.07■□□□□ 0.8
SMARCA1P28370 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMARCA1P28370 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMARCA1P28370 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
SMARCA1P28370 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
SMARCA1P28370 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC20.07■□□□□ 0.8
SMARCA1P28370 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMARCA1P28370 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
SMARCA1P28370 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SMARCA1P28370 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC20.07■□□□□ 0.8
SMARCA1P28370 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMARCA1P28370 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMARCA1P28370 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
SMARCA1P28370 GPR89P-201ENST00000407924 1495 ntBASIC20.06■□□□□ 0.8
SMARCA1P28370 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SMARCA1P28370 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC20.06■□□□□ 0.8
SMARCA1P28370 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMARCA1P28370 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SMARCA1P28370 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMARCA1P28370 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMARCA1P28370 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC20.06■□□□□ 0.8
SMARCA1P28370 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMARCA1P28370 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
SMARCA1P28370 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC20.06■□□□□ 0.8
SMARCA1P28370 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
SMARCA1P28370 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
SMARCA1P28370 SDCCAG3P1-201ENST00000589292 1150 ntBASIC20.06■□□□□ 0.8
SMARCA1P28370 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC20.06■□□□□ 0.8
SMARCA1P28370 MIR7706-201ENST00000613747 67 ntBASIC20.06■□□□□ 0.8
SMARCA1P28370 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SMARCA1P28370 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
SMARCA1P28370 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMARCA1P28370 BOC-212ENST00000485230 2173 ntTSL 2 BASIC20.05■□□□□ 0.8
SMARCA1P28370 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMARCA1P28370 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMARCA1P28370 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC20.05■□□□□ 0.8
SMARCA1P28370 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMARCA1P28370 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
SMARCA1P28370 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
SMARCA1P28370 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC20.05■□□□□ 0.8
SMARCA1P28370 INIP-202ENST00000374236 874 ntTSL 2 BASIC20.05■□□□□ 0.8
SMARCA1P28370 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMARCA1P28370 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC20.05■□□□□ 0.8
SMARCA1P28370 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC20.05■□□□□ 0.8
SMARCA1P28370 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC20.05■□□□□ 0.8
SMARCA1P28370 AC012640.2-201ENST00000561606 901 ntBASIC20.05■□□□□ 0.8
SMARCA1P28370 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC20.05■□□□□ 0.8
SMARCA1P28370 PGM5P2-202ENST00000637225 1043 ntBASIC20.05■□□□□ 0.8
SMARCA1P28370 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMARCA1P28370 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMARCA1P28370 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SMARCA1P28370 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
SMARCA1P28370 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
SMARCA1P28370 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms